SMTL ID : 7kng.2 (1 other biounit)

2.10A resolution structure of independent Phosphoglycerate mutase from C. elegans in complex with a macrocyclic peptide inhibitor (Ce-2 Y7F)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: H.129, R.159, D.160, R.192 Ligands: CL.2 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: R.198, R.269 Ligands: CL.1 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: I.32, L.33, A.35, T.37 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.33, A:T.37 NA.4: 5 residues within 4Å: Chain A: N.452, K.455, M.456, H.464, A.466 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.464, A:A.466

2 x ZN: ZINC ION(Non-covalent)

ZN.5: 6 residues within 4Å: Chain A: D.19, S.68, K.341, D.408, D.449, H.450 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.19, A:D.19, A:S.68, A:D.449, A:H.450 ZN.6: 4 residues within 4Å: Chain A: D.408, H.412, H.467 Chain B: C.15 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Metal complexes: A:D.408, A:D.408, A:H.412, A:H.467, B:C.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wiedmann, M. et al., Structure-activity relationship of ipglycermide binding to phosphoglycerate mutases. J.Biol.Chem. (2021)

Release Date

2021-04-07

Peptides

2,3-bisphosphoglycerate-independent phosphoglycerate mutase: A
DTY-ASP-TYR-PRO-GLY-ASP-PHE-CYS-TYR-LEU-TYR-GLY-THR-CYS: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

2,3-bisphosphoglycerate-independent phosphoglycerate mutase

DTY-ASP-TYR-PRO-GLY-ASP-PHE-CYS-TYR-LEU-TYR-GLY-THR-CYS

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