SMTL ID : 7ko8.1 (2 other biounits)

Cryo-EM structure of the mature and infective Mayaro virus

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-mer

Ligands

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 2 residues within 4Å: Chain B: T.136, N.141 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.3: 2 residues within 4Å: Chain E: T.136, N.141 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.6: 1 residues within 4Å: Chain K: N.141 No protein-ligand interaction detected (PLIP)

4 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.2: 4 residues within 4Å: Chain B: H.116, N.264 Chain C: L.260, N.262 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.4: 4 residues within 4Å: Chain E: H.116, N.264 Chain F: L.260, N.262 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.264 NAG-NAG-BMA-MAN-MAN.7: 6 residues within 4Å: Chain K: H.116, Y.118, D.209, N.264 Chain L: L.260, N.262 2 PLIP interactions: 2 interactions with chain K Hydrophobic interactions: K:Y.118 Hydrogen bonds: K:N.264 NAG-NAG-BMA-MAN-MAN.8: 5 residues within 4Å: Chain H: H.116, N.264 Chain I: L.260, I.261, N.262 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.5: 1 residues within 4Å: Chain H: N.141 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ribeiro-Filho, H.V. et al., Cryo-EM structure of the mature and infective Mayaro virus at 4.4 angstrom resolution reveals features of arthritogenic alphaviruses. Nat Commun (2021)

Release Date

2021-04-28

Peptides

Capsid protein: ADGJ
E1 glycoprotein: BEHK
E2 glycoprotein: CFIL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

G
G

J
J

B
B

E
E

H
H

K
L

C
C

F
F

I
I

L
M

Capsid protein

E1 glycoprotein

E2 glycoprotein

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