- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-20-20-20-mer
- Ligands
- 15 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 20 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA-MAN-MAN.2: 4 residues within 4Å:- Chain B: H.116, N.264
- Chain C: L.260, N.262
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-MAN.4: 4 residues within 4Å:- Chain E: H.116, N.264
- Chain F: L.260, N.262
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:N.264
NAG-NAG-BMA-MAN-MAN.7: 6 residues within 4Å:- Chain K: H.116, Y.118, D.209, N.264
- Chain L: L.260, N.262
2 PLIP interactions:2 interactions with chain K- Hydrophobic interactions: K:Y.118
- Hydrogen bonds: K:N.264
NAG-NAG-BMA-MAN-MAN.8: 5 residues within 4Å:- Chain H: H.116, N.264
- Chain I: L.260, I.261, N.262
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-MAN.10: 4 residues within 4Å:- Chain N: H.116, N.264
- Chain O: L.260, N.262
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-MAN.12: 4 residues within 4Å:- Chain Q: H.116, N.264
- Chain R: L.260, N.262
1 PLIP interactions:1 interactions with chain Q- Hydrogen bonds: Q:N.264
NAG-NAG-BMA-MAN-MAN.15: 6 residues within 4Å:- Chain W: H.116, Y.118, D.209, N.264
- Chain X: L.260, N.262
2 PLIP interactions:2 interactions with chain W- Hydrophobic interactions: W:Y.118
- Hydrogen bonds: W:N.264
NAG-NAG-BMA-MAN-MAN.16: 5 residues within 4Å:- Chain T: H.116, N.264
- Chain U: L.260, I.261, N.262
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-MAN.18: 4 residues within 4Å:- Chain 0: L.260, N.262
- Chain Z: H.116, N.264
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-MAN.20: 4 residues within 4Å:- Chain 2: H.116, N.264
- Chain 3: L.260, N.262
1 PLIP interactions:1 interactions with chain 2- Hydrogen bonds: 2:N.264
NAG-NAG-BMA-MAN-MAN.23: 6 residues within 4Å:- Chain 8: H.116, Y.118, D.209, N.264
- Chain 9: L.260, N.262
2 PLIP interactions:2 interactions with chain 8- Hydrophobic interactions: 8:Y.118
- Hydrogen bonds: 8:N.264
NAG-NAG-BMA-MAN-MAN.24: 5 residues within 4Å:- Chain 5: H.116, N.264
- Chain 6: L.260, I.261, N.262
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-MAN.26: 4 residues within 4Å:- Chain b: H.116, N.264
- Chain c: L.260, N.262
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-MAN.28: 4 residues within 4Å:- Chain e: H.116, N.264
- Chain f: L.260, N.262
1 PLIP interactions:1 interactions with chain e- Hydrogen bonds: e:N.264
NAG-NAG-BMA-MAN-MAN.31: 6 residues within 4Å:- Chain k: H.116, Y.118, D.209, N.264
- Chain l: L.260, N.262
2 PLIP interactions:2 interactions with chain k- Hydrophobic interactions: k:Y.118
- Hydrogen bonds: k:N.264
NAG-NAG-BMA-MAN-MAN.32: 5 residues within 4Å:- Chain h: H.116, N.264
- Chain i: L.260, I.261, N.262
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-MAN.34: 4 residues within 4Å:- Chain n: H.116, N.264
- Chain o: L.260, N.262
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-MAN.36: 4 residues within 4Å:- Chain q: H.116, N.264
- Chain r: L.260, N.262
1 PLIP interactions:1 interactions with chain q- Hydrogen bonds: q:N.264
NAG-NAG-BMA-MAN-MAN.39: 6 residues within 4Å:- Chain w: H.116, Y.118, D.209, N.264
- Chain x: L.260, N.262
2 PLIP interactions:2 interactions with chain w- Hydrophobic interactions: w:Y.118
- Hydrogen bonds: w:N.264
NAG-NAG-BMA-MAN-MAN.40: 5 residues within 4Å:- Chain t: H.116, N.264
- Chain u: L.260, I.261, N.262
No protein-ligand interaction detected (PLIP)- 5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.5: 1 residues within 4Å:- Chain H: N.141
No protein-ligand interaction detected (PLIP)NAG-NAG.13: 1 residues within 4Å:- Chain T: N.141
No protein-ligand interaction detected (PLIP)NAG-NAG.21: 1 residues within 4Å:- Chain 5: N.141
No protein-ligand interaction detected (PLIP)NAG-NAG.29: 1 residues within 4Å:- Chain h: N.141
No protein-ligand interaction detected (PLIP)NAG-NAG.37: 1 residues within 4Å:- Chain t: N.141
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ribeiro-Filho, H.V. et al., Cryo-EM structure of the mature and infective Mayaro virus at 4.4 angstrom resolution reveals features of arthritogenic alphaviruses. Nat Commun (2021)
- Release Date
- 2021-04-28
- Peptides
- Capsid protein: ADGJMPSVY147adgjmpsv
E1 glycoprotein: BEHKNQTWZ258behknqtw
E2 glycoprotein: CFILORUX0369cfilorux - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DG
GJ
JM
AP
DS
GV
JY
A1
D4
G7
Ja
Ad
Dg
Gj
Jm
Ap
Ds
Gv
JB
BE
EH
HK
LN
BQ
ET
HW
LZ
B2
E5
H8
Lb
Be
Eh
Hk
Ln
Bq
Et
Hw
LC
CF
FI
IL
MO
CR
FU
IX
M0
C3
F6
I9
Mc
Cf
Fi
Il
Mo
Cr
Fu
Ix
M
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-20-20-20-mer
- Ligands
- 15 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 20 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ribeiro-Filho, H.V. et al., Cryo-EM structure of the mature and infective Mayaro virus at 4.4 angstrom resolution reveals features of arthritogenic alphaviruses. Nat Commun (2021)
- Release Date
- 2021-04-28
- Peptides
- Capsid protein: ADGJMPSVY147adgjmpsv
E1 glycoprotein: BEHKNQTWZ258behknqtw
E2 glycoprotein: CFILORUX0369cfilorux - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DG
GJ
JM
AP
DS
GV
JY
A1
D4
G7
Ja
Ad
Dg
Gj
Jm
Ap
Ds
Gv
JB
BE
EH
HK
LN
BQ
ET
HW
LZ
B2
E5
H8
Lb
Be
Eh
Hk
Ln
Bq
Et
Hw
LC
CF
FI
IL
MO
CR
FU
IX
M0
C3
F6
I9
Mc
Cf
Fi
Il
Mo
Cr
Fu
Ix
M