SMTL ID : 7kp9.1

asymmetric hTNF-alpha

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-trimer

Ligands

1 x A7G: 1-{[2-(difluoromethoxy)phenyl]methyl}-2-methyl-6-[6-(piperazin-1-yl)pyridin-3-yl]-1H-benzimidazole(Non-covalent)

A7G.1: 20 residues within 4Å: Chain A: K.12, L.58, V.124, I.156, A.157, L.158 Chain B: L.58, Y.60, Y.120, G.122, G.123, L.158 Chain C: L.58, Y.60, S.61, Y.120, L.121, G.122, G.123, Y.152 11 PLIP interactions: 5 interactions with chain A, 5 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: A:L.58, A:L.58, A:V.124, A:I.156, C:L.58, C:Y.60, C:Y.120, C:Y.152 Hydrogen bonds: A:L.158, B:Y.120 pi-Stacking: C:Y.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McMillan, D. et al., Structural insights into the disruption of TNF-TNFR1 signalling by small molecules stabilising a distorted TNF. Nat Commun (2021)

Release Date

2021-01-13

Peptides

Tumor necrosis factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Tumor necrosis factor

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