SMTL ID : 7kxp.1

BTK1 SOAKED WITH COMPOUND 25

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

1 x X9V: 3-tert-butyl-N-[(1S)-6-{2-[3-methyl-1-(oxan-4-yl)-1H-pyrazol-4-yl]-1H-imidazo[4,5-b]pyridin-7-yl}-1,2,3,4-tetrahydronaphthalen-1-yl]-1,2,4-oxadiazole-5-carboxamide(Non-covalent)

X9V.1: 21 residues within 4Å: Chain A: L.20, G.21, T.22, G.23, Q.24, F.25, V.28, A.40, K.42, E.87, Y.88, M.89, A.90, G.92, D.133, N.138, L.140, D.151, L.154, S.155, Y.163 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.20, A:Q.24, A:V.28, A:V.28, A:A.40, A:L.140, A:L.154 Hydrogen bonds: A:M.89, A:D.151 Water bridges: A:G.23, A:Q.24, A:Q.24, A:C.93, A:N.138, A:N.138, A:D.151

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: R.132, W.175, S.176, V.180, F.186 No protein-ligand interaction detected (PLIP) DMS.3: 2 residues within 4Å: Chain A: T.15, F.16 No protein-ligand interaction detected (PLIP) DMS.4: 4 residues within 4Å: Chain A: Y.210, E.211, R.212, F.213 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.213 pi-Cation interactions: A:F.213 DMS.5: 4 residues within 4Å: Chain A: S.204, K.207, P.231, H.232 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.207 Water bridges: A:H.232 pi-Cation interactions: A:H.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiu, H. et al., Discovery of potent and selective reversible Bruton's tyrosine kinase inhibitors. Bioorg.Med.Chem. (2021)

Release Date

2021-05-19

Peptides

Tyrosine-protein kinase BTK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase BTK

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