SMTL ID : 7l4x.1

YTH Domain of Human YTHDC1 with dsDNA Comprising Single N6mA joined by two six-bp DNA duplexes in P3221 Crystal

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: D.11, A.12 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.12 Water bridges: A:R.13, A:S.50 EDO.2: 5 residues within 4Å: Chain A: H.22, V.25, S.26, K.29, Q.67 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.22, A:K.29 EDO.3: 6 residues within 4Å: Chain A: N.123, I.130, G.131, R.132 Chain B: G.8 Chain C: C.13 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.123, A:G.131 Water bridges: A:R.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, D. et al., Human MettL3-MettL14 RNA adenine methyltransferase complex is active on double-stranded DNA containing lesions. Nucleic Acids Res. (2021)

Release Date

2021-11-03

Peptides

YTH domain-containing protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

YTH domain-containing protein 1

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