SMTL ID : 7l4z.5 (4 other biounits)

Structure of SARS-CoV-2 spike RBD in complex with cyclic peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.96 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: G.21, F.24, N.25 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.24 Hydrogen bonds: A:N.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Norman, A. et al., Discovery of Cyclic Peptide Ligands to the SARS-CoV-2 Spike Protein Using mRNA Display. Acs Cent.Sci. (2021)

Release Date

2021-06-30

Peptides

Spike protein S1: A
ACE-DTY-LYS-ALA-GLY-VAL-VAL-TYR-GLY-TYR-ASN-ALA-TRP-ILE-ARG-CYS-NH2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
V

Spike protein S1

ACE-DTY-LYS-ALA-GLY-VAL-VAL-TYR-GLY-TYR-ASN-ALA-TRP-ILE-ARG-CYS-NH2

Related Entries With Identical Sequence