SMTL ID : 8wox.1

Cryo-EM structure of SARS-CoV-2 prototype RBD in complex with rabbit ACE2 (local refinement)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.25, L.50 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.50 Hydrogen bonds: A:N.25

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain B: H.356, H.360, E.384 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.356, B:H.360, B:E.384, B:E.384

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, K. et al., Structural basis of increased binding affinities of spikes from SARS-CoV-2 Omicron variants to rabbit and hare ACE2s reveals the expanding host tendency. Mbio (2024)

Release Date

2023-12-13

Peptides

Spike protein S1: A
Angiotensin-converting enzyme: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Spike protein S1

Angiotensin-converting enzyme

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