SMTL ID : 7l99.4 (3 other biounits)

Crystal structure of BRDT bromodomain 2 in complex with CDD-1302

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x XWJ: N-[3-(acetylamino)-4-methylphenyl]-3-(4-amino-2-methylphenyl)-1-methyl-1H-indazole-5-carboxamide(Non-covalent)

XWJ.1: 14 residues within 4Å: Chain A: W.48, P.49, F.50, V.54, L.59, L.61, Y.64, N.102, C.103, Y.106, N.107, P.108, H.111, V.113 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:P.49, A:F.50, A:V.54, A:V.54, A:L.59, A:L.61, A:L.61, A:Y.64, A:Y.106, A:Y.106, A:Y.106, A:V.113 Hydrogen bonds: A:Y.64, A:N.102, A:Y.106, A:N.107 Water bridges: A:C.103 XWJ.2: 8 residues within 4Å: Chain A: Y.104, K.105, Y.106, N.107, P.108, P.109, R.118 Ligands: JEF.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.104, A:P.109 Hydrogen bonds: A:N.107

1 x JEF: O-(O-(2-AMINOPROPYL)-O'-(2-METHOXYETHYL)POLYPROPYLENE GLYCOL 500)(Non-covalent)

JEF.3: 5 residues within 4Å: Chain A: M.101, Y.104, K.105, P.109 Ligands: XWJ.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:M.101, A:Y.104, A:K.105, A:P.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, Z. et al., Discovery and characterization of bromodomain 2-specific inhibitors of BRDT. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2021-06-30

Peptides

Bromodomain testis-specific protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Bromodomain testis-specific protein

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