SMTL ID : 7l9a.2 (1 other biounit)

Crystal structure of BRDT bromodomain 2 in complex with CDD-1102

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

monomer

Ligands

1 x XWP: N~1~-(5-{[3-(4-amino-2-methylphenyl)-1-methyl-1H-indazole-5-carbonyl]amino}-2-methylphenyl)-N~4~-methylbenzene-1,4-dicarboxamide(Non-covalent)

XWP.1: 17 residues within 4Å: Chain A: W.48, P.49, F.50, V.54, L.59, L.61, H.62, N.63, Y.64, V.67, N.102, C.103, Y.106, N.107, P.108, H.111, V.113 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:P.49, A:F.50, A:V.54, A:V.54, A:L.59, A:L.59, A:L.61, A:L.61, A:Y.64, A:V.67, A:Y.106, A:Y.106, A:Y.106, A:P.108 Hydrogen bonds: A:Y.64, A:N.102, A:Y.106, A:N.107, A:N.107 Water bridges: A:N.102

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 7 residues within 4Å: Chain A: W.48, P.49, Y.51, N.52, P.53, V.54, D.55 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, Z. et al., Discovery and characterization of bromodomain 2-specific inhibitors of BRDT. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2021-06-30

Peptides

Bromodomain testis-specific protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bromodomain testis-specific protein

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