SMTL ID : 7l9t.1

Crystal Structure of Dihydrofolate reductase from Mycolicibacterium smegmatis in complex with SDDC-0001565 inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x QKJ: 3-(3-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)propanoic acid(Non-covalent)

QKJ.1: 14 residues within 4Å: Chain A: I.14, W.15, A.16, D.36, L.37, F.40, K.41, L.59, P.60, L.66, R.69, I.100, Y.106, T.119 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.37, A:L.37, A:F.40, A:L.59, A:P.60, A:L.66 Hydrogen bonds: A:I.14, A:T.119, A:T.119 Water bridges: A:A.16, A:K.41, A:Y.106, A:Y.106 Salt bridges: A:D.36, A:K.41, A:R.69

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: D.129, G.130, R.133 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.129, A:G.130 Salt bridges: A:R.133 SO4.3: 7 residues within 4Å: Chain A: G.52, R.53, L.54, T.55, G.101, G.102, I.105 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.52, A:L.54, A:T.55, A:T.55 Water bridges: A:R.53, A:A.103

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 4 residues within 4Å: Chain A: W.31, R.32, L.33, L.37 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

DeBouver, N.D. et al., Crystal Structure of Acetyl-coenzyme A synthetase synthetase from Coccidioides immitis in complex with PRX. to be published

Release Date

2021-01-20

Peptides

Dihydrofolate reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dihydrofolate reductase

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