SMTL ID : 7l9u.1

Crystal Structure of S-adenosylmethionine-dependent methyltransferase UmaA from Mycobacterium tuberculosis in complex with a 12-mer PEG

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x 12P: DODECAETHYLENE GLYCOL(Non-covalent)

12P.1: 16 residues within 4Å: Chain A: I.22, Y.23, F.30, Y.40, S.103, Q.106, I.206, L.212, Y.239, W.246, Y.269, Y.272, C.276, F.279, F.280, S.285 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.40, A:Y.269, A:S.285 Water bridges: A:Y.23

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: F.45, E.48, Q.237, H.238, R.241 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.241

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.3: 9 residues within 4Å: Chain A: T.41, C.42, G.144, E.147, H.174, T.175, I.176, Y.239, V.287 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:C.42, A:E.147, A:E.147, A:Y.239, A:Y.239 NO3.4: 3 residues within 4Å: Chain A: R.241, N.244, R.281 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.244, A:R.281, A:R.281 Water bridges: A:R.241, A:R.241

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: S.26, F.29, L.260, Q.261 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Crystal Structure of S-adenosylmethionine-dependent methyltransferase UmaA from Mycobacterium tuberculosis in complex with a 12-mer PEG. to be published

Release Date

2021-02-10

Peptides

S-adenosylmethionine-dependent methyltransferase UmaA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

S-adenosylmethionine-dependent methyltransferase UmaA

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