SMTL ID : 7mcj.2 (1 other biounit)

Crystal Structure of S-adenosylmethionine-dependent methyltransferase UmaA from Mycobacterium tuberculosis in complex with compound 8918

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x FD7: N-(2,6-diethylphenyl)-N'-(N-ethylcarbamimidoyl)urea(Non-covalent)

FD7.1: 14 residues within 4Å: Chain A: F.33, L.34, Y.40, G.144, E.147, I.176, Y.239, L.243, W.246, Y.272, L.273, C.276, F.280 Ligands: NO3.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.33, A:L.34, A:Y.40, A:E.147, A:I.176, A:L.243, A:W.246, A:Y.272, A:L.273, A:F.280 Hydrogen bonds: A:Y.239, A:Y.239, A:Y.239 Salt bridges: A:E.147

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 8 residues within 4Å: Chain A: T.41, C.42, G.144, E.147, H.174, I.176, Y.239 Ligands: FD7.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:C.42, A:H.174, A:I.176, A:Y.239, A:Y.239

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: F.45, E.48, Q.237, H.238, R.241 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.241 EDO.6: 3 residues within 4Å: Chain A: F.30, Y.40, Q.106 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.106

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 2 residues within 4Å: Chain A: G.79, I.143 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:G.79, A:I.143, H2O.1, H2O.1, H2O.4

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: A.39, Y.40, T.41, F.60 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Crystal Structure of S-adenosylmethionine-dependent methyltransferase UmaA from Mycobacterium tuberculosis in complex with compound 8918. to be published

Release Date

2022-04-13

Peptides

S-adenosylmethionine-dependent methyltransferase UmaA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

S-adenosylmethionine-dependent methyltransferase UmaA

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