SMTL ID : 7lbg.1

CryoEM structure of the HCMV Trimer gHgLgO in complex with human Transforming growth factor beta receptor type 3 and neutralizing fabs 13H11 and MSL-109

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG.1: 5 residues within 4Å: Chain C: L.424, D.427, K.428, N.431, W.461 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN.2: 11 residues within 4Å: Chain C: N.160, E.164, Q.165, G.166, C.167, G.168, N.169, M.320, R.325, S.379 Ligands: NAG.19 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:G.166, C:R.325, C:G.166

17 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: H.190, N.192 Ligand excluded by PLIP NAG.4: 1 residues within 4Å: Chain A: N.67 Ligand excluded by PLIP NAG.5: 2 residues within 4Å: Chain A: Y.61, N.62 Ligand excluded by PLIP NAG.6: 2 residues within 4Å: Chain A: N.55 Chain B: W.68 Ligand excluded by PLIP NAG.7: 3 residues within 4Å: Chain A: A.648, N.700, T.702 Ligand excluded by PLIP NAG.8: 1 residues within 4Å: Chain B: N.74 Ligand excluded by PLIP NAG.9: 1 residues within 4Å: Chain C: N.85 Ligand excluded by PLIP NAG.10: 1 residues within 4Å: Chain C: N.101 Ligand excluded by PLIP NAG.11: 4 residues within 4Å: Chain C: N.155, R.159, I.371, Y.372 Ligand excluded by PLIP NAG.12: 3 residues within 4Å: Chain C: F.170, R.216, N.217 Ligand excluded by PLIP NAG.13: 4 residues within 4Å: Chain C: N.240, T.242, K.243, N.246 Ligand excluded by PLIP NAG.14: 3 residues within 4Å: Chain C: N.348, T.350, A.351 Ligand excluded by PLIP NAG.15: 3 residues within 4Å: Chain C: N.365, T.367, Y.369 Ligand excluded by PLIP NAG.16: 2 residues within 4Å: Chain C: N.383, K.410 Ligand excluded by PLIP NAG.17: 2 residues within 4Å: Chain C: V.451, N.452 Ligand excluded by PLIP NAG.18: 4 residues within 4Å: Chain C: I.104, N.128, T.130, A.131 Ligand excluded by PLIP NAG.19: 4 residues within 4Å: Chain C: N.169 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN.2, NAG-NAG-BMA-MAN-MAN-MAN-MAN.2, NAG-NAG-BMA-MAN-MAN-MAN-MAN.2 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kschonsak, M. et al., Structures of HCMV Trimer reveal the basis for receptor recognition and cell entry. Cell (2021)

Release Date

2021-03-10

Peptides

Envelope glycoprotein H: A
Envelope glycoprotein L: B
Envelope glycoprotein O: C
Transforming growth factor beta receptor type 3: D
Fab 13H11 light chain: E
Fab 13H11 heavy chain: F
Fab MSL-109 light chain: G
Fab MSL-109 heavy chain: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Envelope glycoprotein H

Envelope glycoprotein L

Envelope glycoprotein O

Transforming growth factor beta receptor type 3

Fab 13H11 light chain

Fab 13H11 heavy chain

Fab MSL-109 light chain

Fab MSL-109 heavy chain

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