SMTL ID : 7lbt.4 (3 other biounits)

Crystal structure of the second bromodomain (BD2) of human BRD3 bound to ERK5-IN-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x VYJ: 11-cyclopentyl-2-({2-ethoxy-4-[4-(4-methylpiperazin-1-yl)piperidine-1-carbonyl]phenyl}amino)-5-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one(Non-covalent)

VYJ.1: 12 residues within 4Å: Chain A: W.27, P.28, F.29, V.33, A.37, L.38, E.39, L.40, C.82, Y.85, N.86, V.92 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.27, A:P.28, A:L.40, A:Y.85, A:V.92 Hydrogen bonds: A:N.86 Salt bridges: A:E.39, A:E.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karim, R.M. et al., Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors. J.Med.Chem. (2021)

Release Date

2021-07-14

Peptides

Bromodomain-containing protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Bromodomain-containing protein 3

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