SMTL ID : 7ug5.2 (3 other biounits)

Second bromodomain of BRD3 liganded with BMS-536924

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x N6I: (3M)-4-{[(2S)-2-(3-chlorophenyl)-2-hydroxyethyl]amino}-3-[4-methyl-6-(morpholin-4-yl)-1H-benzimidazol-2-yl]pyridin-2(1H)-one(Non-covalent)

N6I.1: 10 residues within 4Å: Chain A: W.27, P.28, V.33, L.38, L.40, N.86, H.90, E.91, V.92, M.95 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.27, A:L.40, A:V.92 Hydrogen bonds: A:N.86 pi-Cation interactions: A:H.90, A:H.90 Halogen bonds: A:E.91

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: R.97, Q.100, D.101, E.104 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.101 Water bridges: A:D.101 EDO.3: 2 residues within 4Å: Chain A: K.20 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.20 EDO.4: 4 residues within 4Å: Chain A: E.39, D.42, Y.85 Ligands: EDO.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.39, A:D.42 EDO.5: 2 residues within 4Å: Chain A: K.20 Ligands: EDO.3 No protein-ligand interaction detected (PLIP) EDO.6: 4 residues within 4Å: Chain A: D.11, R.15, L.18, K.57 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.11, A:K.57 EDO.7: 1 residues within 4Å: Ligands: EDO.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schonbrunn, E. et al., Structural basis of CBP and EP300 interaction with kinase inhibitors. To Be Published

Release Date

2023-04-05

Peptides

Bromodomain-containing protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bromodomain-containing protein 3

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