SMTL ID : 7lcb.1

C1B domain of Protein kinase C in complex with prostratin and phosphatidylcholine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.3, C.33, C.36, C.52 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.3, A:C.33, A:C.36, A:C.52 ZN.2: 4 residues within 4Å: Chain A: C.16, C.19, H.41, C.44 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.16, A:C.19, A:H.41, A:C.44

1 x XYV: prostratin(Non-covalent)

XYV.3: 12 residues within 4Å: Chain A: Y.10, M.11, S.12, P.13, T.14, L.22, L.23, W.24, G.25, L.26, Q.29 Ligands: XP5.4 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.22, A:W.24, A:L.26 Hydrogen bonds: A:T.14, A:T.14, A:G.25

1 x XP5: (4S,7R)-7-(heptanoyloxy)-4-hydroxy-N,N,N-trimethyl-10-oxo-3,5,9-trioxa-4-phosphahexadecan-1-aminium 4-oxide

XP5.4: 5 residues within 4Å: Chain A: G.25, L.26, V.27, K.28 Ligands: XYV.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.26, A:V.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Katti, S.S. et al., Structural anatomy of Protein Kinase C C1 domain interactions with diacylglycerol and other agonists. Nat Commun (2022)

Release Date

2022-05-04

Peptides

Protein kinase C delta type: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein kinase C delta type

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