SMTL ID : 7lcg.2 (3 other biounits)

The mature Usutu SAAR-1776, Model A

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.42 Å

Oligo State

hetero-15-15-mer

Ligands

15 x 0SM: TRIMETHYL-[2-[[(2S,3S)-2-(OCTADECANOYLAMINO)-3-OXIDANYL-BUTOXY]-OXIDANYL-PHOSPHORYL]OXYETHYL]AZANIUM(Non-covalent)

0SM.1: 10 residues within 4Å: Chain A: T.409, T.410, G.413, A.414, R.416, L.417, A.424, W.425, F.427, N.435 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.410 Hydrogen bonds: A:T.410, A:T.410 Salt bridges: A:R.416 0SM.7: 10 residues within 4Å: Chain C: T.409, T.410, G.413, A.414, R.416, L.417, A.424, W.425, F.427, N.435 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.416 0SM.11: 11 residues within 4Å: Chain E: T.409, T.410, G.413, A.414, R.416, L.417, A.424, W.425, F.427, N.435 Ligands: PC7.12 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:T.409 Salt bridges: E:R.416 0SM.13: 10 residues within 4Å: Chain G: T.409, T.410, G.413, A.414, R.416, L.417, A.424, W.425, F.427, N.435 4 PLIP interactions: 4 interactions with chain G Hydrophobic interactions: G:T.410 Hydrogen bonds: G:T.410, G:T.410 Salt bridges: G:R.416 0SM.19: 10 residues within 4Å: Chain I: T.409, T.410, G.413, A.414, R.416, L.417, A.424, W.425, F.427, N.435 1 PLIP interactions: 1 interactions with chain I Salt bridges: I:R.416 0SM.23: 11 residues within 4Å: Chain K: T.409, T.410, G.413, A.414, R.416, L.417, A.424, W.425, F.427, N.435 Ligands: PC7.24 2 PLIP interactions: 2 interactions with chain K Hydrogen bonds: K:T.409 Salt bridges: K:R.416 0SM.25: 10 residues within 4Å: Chain M: T.409, T.410, G.413, A.414, R.416, L.417, A.424, W.425, F.427, N.435 4 PLIP interactions: 4 interactions with chain M Hydrophobic interactions: M:T.410 Hydrogen bonds: M:T.410, M:T.410 Salt bridges: M:R.416 0SM.31: 10 residues within 4Å: Chain O: T.409, T.410, G.413, A.414, R.416, L.417, A.424, W.425, F.427, N.435 1 PLIP interactions: 1 interactions with chain O Salt bridges: O:R.416 0SM.35: 11 residues within 4Å: Chain Q: T.409, T.410, G.413, A.414, R.416, L.417, A.424, W.425, F.427, N.435 Ligands: PC7.36 2 PLIP interactions: 2 interactions with chain Q Hydrogen bonds: Q:T.409 Salt bridges: Q:R.416 0SM.37: 10 residues within 4Å: Chain S: T.409, T.410, G.413, A.414, R.416, L.417, A.424, W.425, F.427, N.435 4 PLIP interactions: 4 interactions with chain S Hydrophobic interactions: S:T.410 Hydrogen bonds: S:T.410, S:T.410 Salt bridges: S:R.416 0SM.43: 10 residues within 4Å: Chain U: T.409, T.410, G.413, A.414, R.416, L.417, A.424, W.425, F.427, N.435 1 PLIP interactions: 1 interactions with chain U Salt bridges: U:R.416 0SM.47: 11 residues within 4Å: Chain W: T.409, T.410, G.413, A.414, R.416, L.417, A.424, W.425, F.427, N.435 Ligands: PC7.48 2 PLIP interactions: 2 interactions with chain W Hydrogen bonds: W:T.409 Salt bridges: W:R.416 0SM.49: 10 residues within 4Å: Chain Y: T.409, T.410, G.413, A.414, R.416, L.417, A.424, W.425, F.427, N.435 4 PLIP interactions: 4 interactions with chain Y Hydrophobic interactions: Y:T.410 Hydrogen bonds: Y:T.410, Y:T.410 Salt bridges: Y:R.416 0SM.55: 10 residues within 4Å: Chain 0: T.409, T.410, G.413, A.414, R.416, L.417, A.424, W.425, F.427, N.435 1 PLIP interactions: 1 interactions with chain 0 Salt bridges: 0:R.416 0SM.59: 11 residues within 4Å: Chain 2: T.409, T.410, G.413, A.414, R.416, L.417, A.424, W.425, F.427, N.435 Ligands: PC7.60 2 PLIP interactions: 2 interactions with chain 2 Hydrogen bonds: 2:T.409 Salt bridges: 2:R.416

15 x PC7: (7S)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE(Non-covalent)

PC7.2: 14 residues within 4Å: Chain A: A.414, L.417, A.418, A.419, G.421, V.441, H.442, F.445, G.446, F.449, R.450, V.490, L.494 Chain B: E.9 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.417, A:L.417, A:F.445 Hydrogen bonds: A:G.446 Salt bridges: A:H.442, A:R.450 PC7.8: 13 residues within 4Å: Chain C: L.417, A.418, A.419, G.421, H.442, F.445, G.446, F.449, R.450, L.482, A.486, V.490, L.494 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:L.482, C:L.482, C:V.490, C:V.490 Salt bridges: C:H.442, C:R.450 PC7.12: 16 residues within 4Å: Chain E: A.414, L.417, A.418, A.419, L.420, G.421, H.442, F.445, G.446, F.449, R.450, V.483, A.486, V.490, L.494 Ligands: 0SM.11 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:F.445, E:F.445 Salt bridges: E:H.442, E:R.450 PC7.14: 14 residues within 4Å: Chain G: A.414, L.417, A.418, A.419, G.421, V.441, H.442, F.445, G.446, F.449, R.450, V.490, L.494 Chain H: E.9 6 PLIP interactions: 6 interactions with chain G Hydrophobic interactions: G:L.417, G:L.417, G:F.445 Hydrogen bonds: G:G.446 Salt bridges: G:H.442, G:R.450 PC7.20: 13 residues within 4Å: Chain I: L.417, A.418, A.419, G.421, H.442, F.445, G.446, F.449, R.450, L.482, A.486, V.490, L.494 6 PLIP interactions: 6 interactions with chain I Hydrophobic interactions: I:L.482, I:L.482, I:V.490, I:V.490 Salt bridges: I:H.442, I:R.450 PC7.24: 16 residues within 4Å: Chain K: A.414, L.417, A.418, A.419, L.420, G.421, H.442, F.445, G.446, F.449, R.450, V.483, A.486, V.490, L.494 Ligands: 0SM.23 4 PLIP interactions: 4 interactions with chain K Hydrophobic interactions: K:F.445, K:F.445 Salt bridges: K:H.442, K:R.450 PC7.26: 14 residues within 4Å: Chain M: A.414, L.417, A.418, A.419, G.421, V.441, H.442, F.445, G.446, F.449, R.450, V.490, L.494 Chain N: E.9 6 PLIP interactions: 6 interactions with chain M Hydrophobic interactions: M:L.417, M:L.417, M:F.445 Hydrogen bonds: M:G.446 Salt bridges: M:H.442, M:R.450 PC7.32: 13 residues within 4Å: Chain O: L.417, A.418, A.419, G.421, H.442, F.445, G.446, F.449, R.450, L.482, A.486, V.490, L.494 6 PLIP interactions: 6 interactions with chain O Hydrophobic interactions: O:L.482, O:L.482, O:V.490, O:V.490 Salt bridges: O:H.442, O:R.450 PC7.36: 16 residues within 4Å: Chain Q: A.414, L.417, A.418, A.419, L.420, G.421, H.442, F.445, G.446, F.449, R.450, V.483, A.486, V.490, L.494 Ligands: 0SM.35 4 PLIP interactions: 4 interactions with chain Q Hydrophobic interactions: Q:F.445, Q:F.445 Salt bridges: Q:H.442, Q:R.450 PC7.38: 14 residues within 4Å: Chain S: A.414, L.417, A.418, A.419, G.421, V.441, H.442, F.445, G.446, F.449, R.450, V.490, L.494 Chain T: E.9 6 PLIP interactions: 6 interactions with chain S Hydrophobic interactions: S:L.417, S:L.417, S:F.445 Hydrogen bonds: S:G.446 Salt bridges: S:H.442, S:R.450 PC7.44: 13 residues within 4Å: Chain U: L.417, A.418, A.419, G.421, H.442, F.445, G.446, F.449, R.450, L.482, A.486, V.490, L.494 6 PLIP interactions: 6 interactions with chain U Hydrophobic interactions: U:L.482, U:L.482, U:V.490, U:V.490 Salt bridges: U:H.442, U:R.450 PC7.48: 16 residues within 4Å: Chain W: A.414, L.417, A.418, A.419, L.420, G.421, H.442, F.445, G.446, F.449, R.450, V.483, A.486, V.490, L.494 Ligands: 0SM.47 4 PLIP interactions: 4 interactions with chain W Hydrophobic interactions: W:F.445, W:F.445 Salt bridges: W:H.442, W:R.450 PC7.50: 14 residues within 4Å: Chain Y: A.414, L.417, A.418, A.419, G.421, V.441, H.442, F.445, G.446, F.449, R.450, V.490, L.494 Chain Z: E.9 6 PLIP interactions: 6 interactions with chain Y Hydrophobic interactions: Y:L.417, Y:L.417, Y:F.445 Hydrogen bonds: Y:G.446 Salt bridges: Y:H.442, Y:R.450 PC7.56: 13 residues within 4Å: Chain 0: L.417, A.418, A.419, G.421, H.442, F.445, G.446, F.449, R.450, L.482, A.486, V.490, L.494 6 PLIP interactions: 6 interactions with chain 0 Hydrophobic interactions: 0:L.482, 0:L.482, 0:V.490, 0:V.490 Salt bridges: 0:H.442, 0:R.450 PC7.60: 16 residues within 4Å: Chain 2: A.414, L.417, A.418, A.419, L.420, G.421, H.442, F.445, G.446, F.449, R.450, V.483, A.486, V.490, L.494 Ligands: 0SM.59 4 PLIP interactions: 4 interactions with chain 2 Hydrophobic interactions: 2:F.445, 2:F.445 Salt bridges: 2:H.442, 2:R.450

30 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 6 residues within 4Å: Chain A: S.66, D.67, T.89, N.118, F.119, T.120 Ligand excluded by PLIP NAG.4: 2 residues within 4Å: Chain A: N.154, S.156 Ligand excluded by PLIP NAG.5: 5 residues within 4Å: Chain C: S.66, D.67, Y.90, N.118, T.120 Ligand excluded by PLIP NAG.6: 2 residues within 4Å: Chain C: N.154, S.157 Ligand excluded by PLIP NAG.9: 7 residues within 4Å: Chain E: S.66, D.67, T.89, Y.90, N.118, F.119, T.120 Ligand excluded by PLIP NAG.10: 3 residues within 4Å: Chain E: N.154, S.156, S.157 Ligand excluded by PLIP NAG.15: 6 residues within 4Å: Chain G: S.66, D.67, T.89, N.118, F.119, T.120 Ligand excluded by PLIP NAG.16: 2 residues within 4Å: Chain G: N.154, S.156 Ligand excluded by PLIP NAG.17: 5 residues within 4Å: Chain I: S.66, D.67, Y.90, N.118, T.120 Ligand excluded by PLIP NAG.18: 2 residues within 4Å: Chain I: N.154, S.157 Ligand excluded by PLIP NAG.21: 7 residues within 4Å: Chain K: S.66, D.67, T.89, Y.90, N.118, F.119, T.120 Ligand excluded by PLIP NAG.22: 3 residues within 4Å: Chain K: N.154, S.156, S.157 Ligand excluded by PLIP NAG.27: 6 residues within 4Å: Chain M: S.66, D.67, T.89, N.118, F.119, T.120 Ligand excluded by PLIP NAG.28: 2 residues within 4Å: Chain M: N.154, S.156 Ligand excluded by PLIP NAG.29: 5 residues within 4Å: Chain O: S.66, D.67, Y.90, N.118, T.120 Ligand excluded by PLIP NAG.30: 2 residues within 4Å: Chain O: N.154, S.157 Ligand excluded by PLIP NAG.33: 7 residues within 4Å: Chain Q: S.66, D.67, T.89, Y.90, N.118, F.119, T.120 Ligand excluded by PLIP NAG.34: 3 residues within 4Å: Chain Q: N.154, S.156, S.157 Ligand excluded by PLIP NAG.39: 6 residues within 4Å: Chain S: S.66, D.67, T.89, N.118, F.119, T.120 Ligand excluded by PLIP NAG.40: 2 residues within 4Å: Chain S: N.154, S.156 Ligand excluded by PLIP NAG.41: 5 residues within 4Å: Chain U: S.66, D.67, Y.90, N.118, T.120 Ligand excluded by PLIP NAG.42: 2 residues within 4Å: Chain U: N.154, S.157 Ligand excluded by PLIP NAG.45: 7 residues within 4Å: Chain W: S.66, D.67, T.89, Y.90, N.118, F.119, T.120 Ligand excluded by PLIP NAG.46: 3 residues within 4Å: Chain W: N.154, S.156, S.157 Ligand excluded by PLIP NAG.51: 6 residues within 4Å: Chain Y: S.66, D.67, T.89, N.118, F.119, T.120 Ligand excluded by PLIP NAG.52: 2 residues within 4Å: Chain Y: N.154, S.156 Ligand excluded by PLIP NAG.53: 5 residues within 4Å: Chain 0: S.66, D.67, Y.90, N.118, T.120 Ligand excluded by PLIP NAG.54: 2 residues within 4Å: Chain 0: N.154, S.157 Ligand excluded by PLIP NAG.57: 7 residues within 4Å: Chain 2: S.66, D.67, T.89, Y.90, N.118, F.119, T.120 Ligand excluded by PLIP NAG.58: 3 residues within 4Å: Chain 2: N.154, S.156, S.157 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Khare, B. et al., Structure of Usutu virus SAAR-1776 displays fusion loop asymmetry. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2021-09-01

Peptides

Envelope protein E: ACEGIKMOQSUWY02
Membrane protein M: BDFHJLNPRTVXZ13

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
A

I
C

K
E

M
A

O
C

Q
E

S
A

U
C

W
E

Y
A

0
C

2
E

B
B

D
D

F
F

H
B

J
D

L
F

N
B

P
D

R
F

T
B

V
D

X
F

Z
B

1
D

3
F

Envelope protein E

Membrane protein M

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