SMTL ID : 7lcg.4 (3 other biounits)

The mature Usutu SAAR-1776, Model A

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.42 Å

Oligo State

hetero-3-3-mer

Ligands

3 x 0SM: TRIMETHYL-[2-[[(2S,3S)-2-(OCTADECANOYLAMINO)-3-OXIDANYL-BUTOXY]-OXIDANYL-PHOSPHORYL]OXYETHYL]AZANIUM(Non-covalent)

0SM.1: 10 residues within 4Å: Chain A: T.409, T.410, G.413, A.414, R.416, L.417, A.424, W.425, F.427, N.435 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.410 Hydrogen bonds: A:T.410, A:T.410 Salt bridges: A:R.416 0SM.7: 10 residues within 4Å: Chain C: T.409, T.410, G.413, A.414, R.416, L.417, A.424, W.425, F.427, N.435 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.416 0SM.11: 11 residues within 4Å: Chain E: T.409, T.410, G.413, A.414, R.416, L.417, A.424, W.425, F.427, N.435 Ligands: PC7.12 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:T.409 Salt bridges: E:R.416

3 x PC7: (7S)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE(Non-covalent)

PC7.2: 14 residues within 4Å: Chain A: A.414, L.417, A.418, A.419, G.421, V.441, H.442, F.445, G.446, F.449, R.450, V.490, L.494 Chain B: E.9 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.417, A:L.417, A:F.445 Hydrogen bonds: A:G.446 Salt bridges: A:H.442, A:R.450 PC7.8: 13 residues within 4Å: Chain C: L.417, A.418, A.419, G.421, H.442, F.445, G.446, F.449, R.450, L.482, A.486, V.490, L.494 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:L.482, C:L.482, C:V.490, C:V.490 Salt bridges: C:H.442, C:R.450 PC7.12: 16 residues within 4Å: Chain E: A.414, L.417, A.418, A.419, L.420, G.421, H.442, F.445, G.446, F.449, R.450, V.483, A.486, V.490, L.494 Ligands: 0SM.11 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:F.445, E:F.445 Salt bridges: E:H.442, E:R.450

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 6 residues within 4Å: Chain A: S.66, D.67, T.89, N.118, F.119, T.120 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain A: N.154, S.156 No protein-ligand interaction detected (PLIP) NAG.5: 5 residues within 4Å: Chain C: S.66, D.67, Y.90, N.118, T.120 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:D.67 Hydrogen bonds: C:S.66, C:N.118, C:T.120 NAG.6: 2 residues within 4Å: Chain C: N.154, S.157 No protein-ligand interaction detected (PLIP) NAG.9: 7 residues within 4Å: Chain E: S.66, D.67, T.89, Y.90, N.118, F.119, T.120 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.118 NAG.10: 3 residues within 4Å: Chain E: N.154, S.156, S.157 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Khare, B. et al., Structure of Usutu virus SAAR-1776 displays fusion loop asymmetry. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2021-09-01

Peptides

Envelope protein E: ACE
Membrane protein M: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Envelope protein E

Membrane protein M

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