SMTL ID : 7lg5.1

Synechocystis sp. UTEX2470 Cyanophycin synthetase 1 with ATP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

8 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 18 residues within 4Å: Chain A: T.496, N.497, G.498, K.499, T.500, T.501, T.522, E.558, F.692, N.696, G.730, R.731, D.745, A.751, G.752, A.755 Ligands: MG.3, MG.4 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.498, A:K.499, A:T.500, A:T.501, A:T.501, A:T.522, A:N.696, A:N.696, A:D.745 Salt bridges: A:K.499, A:K.499, A:R.731 ATP.2: 11 residues within 4Å: Chain A: V.259, H.267, I.271, I.273, E.300, R.301, Y.302, Y.303, D.307, V.449 Ligands: MG.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.267, A:E.300, A:Y.303, A:D.307 Salt bridges: A:K.220 ATP.6: 18 residues within 4Å: Chain B: T.496, N.497, G.498, K.499, T.500, T.501, T.522, E.558, F.692, N.696, G.730, R.731, D.745, A.751, G.752, A.755 Ligands: MG.8, MG.9 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:G.498, B:K.499, B:T.500, B:T.501, B:N.696, B:N.696, B:D.745 Salt bridges: B:K.499, B:K.499, B:R.731 ATP.7: 11 residues within 4Å: Chain B: V.259, H.267, I.271, I.273, E.300, R.301, Y.302, Y.303, D.307, V.449 Ligands: MG.10 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:H.267, B:E.300, B:E.300, B:Y.303, B:D.307, B:D.307 Salt bridges: B:K.220 ATP.11: 18 residues within 4Å: Chain C: T.496, N.497, G.498, K.499, T.500, T.501, T.522, E.558, F.692, N.696, G.730, R.731, D.745, A.751, G.752, A.755 Ligands: MG.13, MG.14 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:G.498, C:K.499, C:T.500, C:T.501, C:N.696, C:N.696, C:D.745 Salt bridges: C:K.499, C:K.499, C:R.731 ATP.12: 11 residues within 4Å: Chain C: V.259, H.267, I.271, I.273, E.300, R.301, Y.302, Y.303, D.307, V.449 Ligands: MG.15 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:H.267, C:E.300, C:E.300, C:Y.303, C:D.307, C:D.307 Salt bridges: C:K.220 ATP.16: 18 residues within 4Å: Chain D: T.496, N.497, G.498, K.499, T.500, T.501, T.522, E.558, F.692, N.696, G.730, R.731, D.745, A.751, G.752, A.755 Ligands: MG.18, MG.19 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:G.498, D:K.499, D:T.500, D:T.501, D:T.501, D:T.522, D:N.696, D:N.696, D:D.745 Salt bridges: D:K.499, D:K.499, D:R.731 ATP.17: 11 residues within 4Å: Chain D: V.259, H.267, I.271, I.273, E.300, R.301, Y.302, Y.303, D.307, V.449 Ligands: MG.20 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:H.267, D:E.300, D:Y.303, D:D.307 Salt bridges: D:K.220

12 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: T.500, T.522, E.558 Ligands: ATP.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:T.500, A:T.522, A:E.558, A:E.558 MG.4: 3 residues within 4Å: Chain A: D.585, H.586 Ligands: ATP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.586 MG.5: 3 residues within 4Å: Chain A: D.431, E.450 Ligands: ATP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.431, A:E.450 MG.8: 4 residues within 4Å: Chain B: T.500, T.522, E.558 Ligands: ATP.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:T.500, B:T.522, B:E.558, B:E.558 MG.9: 3 residues within 4Å: Chain B: D.585, H.586 Ligands: ATP.6 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.586 MG.10: 3 residues within 4Å: Chain B: D.431, E.450 Ligands: ATP.7 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.431, B:E.450 MG.13: 4 residues within 4Å: Chain C: T.500, T.522, E.558 Ligands: ATP.11 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:T.500, C:T.522, C:E.558, C:E.558 MG.14: 3 residues within 4Å: Chain C: D.585, H.586 Ligands: ATP.11 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.586 MG.15: 3 residues within 4Å: Chain C: D.431, E.450 Ligands: ATP.12 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.431, C:E.450 MG.18: 4 residues within 4Å: Chain D: T.500, T.522, E.558 Ligands: ATP.16 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:T.500, D:T.522, D:E.558, D:E.558 MG.19: 3 residues within 4Å: Chain D: D.585, H.586 Ligands: ATP.16 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:H.586 MG.20: 3 residues within 4Å: Chain D: D.431, E.450 Ligands: ATP.17 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.431, D:E.450

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharon, I. et al., Structures and function of the amino acid polymerase cyanophycin synthetase. Nat.Chem.Biol. (2021)

Release Date

2021-08-18

Peptides

Cyanophycin synthase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Cyanophycin synthase

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