SMTL ID : 7lgj.1

Cyanophycin synthetase 1 from Synechocystis sp. UTEX2470 with ADPCP and 8x(Asp-Arg)-NH2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x 7ID- 7ID- 7ID- 7ID- NH2: 8x(Asp-Arg)-NH2(Non-covalent)

7ID-7ID-7ID-7ID-NH2.1: 20 residues within 4Å: Chain A: A.162, L.163, G.164, P.165, S.166, R.187, A.188, Q.202, A.203, L.205, V.214, C.218, R.309, H.353, N.452, A.453, A.454, P.455, G.456 Chain B: E.215 13 PLIP interactions: 12 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:A.162, A:S.166, A:S.166, A:A.188, A:Q.202, A:R.309, A:R.309, A:H.353, A:A.453, A:A.454, A:A.454, A:G.456 Salt bridges: B:E.215 7ID-7ID-7ID-7ID-NH2.2: 20 residues within 4Å: Chain A: E.215 Chain B: A.162, L.163, G.164, P.165, S.166, R.187, A.188, Q.202, A.203, L.205, V.214, C.218, R.309, H.353, N.452, A.453, A.454, P.455, G.456 12 PLIP interactions: 11 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:A.162, B:S.166, B:S.166, B:Q.202, B:R.309, B:R.309, B:H.353, B:A.453, B:A.454, B:A.454, B:G.456 Salt bridges: A:E.215 7ID-7ID-7ID-7ID-NH2.3: 20 residues within 4Å: Chain C: A.162, L.163, G.164, P.165, S.166, R.187, A.188, Q.202, A.203, L.205, V.214, C.218, R.309, H.353, N.452, A.453, A.454, P.455, G.456 Chain D: E.215 12 PLIP interactions: 11 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:A.162, C:S.166, C:S.166, C:Q.202, C:R.309, C:R.309, C:H.353, C:A.453, C:A.454, C:A.454, C:G.456 Salt bridges: D:E.215 7ID-7ID-7ID-7ID-NH2.4: 20 residues within 4Å: Chain C: E.215 Chain D: A.162, L.163, G.164, P.165, S.166, R.187, A.188, Q.202, A.203, L.205, V.214, C.218, R.309, H.353, N.452, A.453, A.454, P.455, G.456 13 PLIP interactions: 12 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:A.162, D:S.166, D:S.166, D:A.188, D:Q.202, D:R.309, D:R.309, D:H.353, D:A.453, D:A.454, D:A.454, D:G.456 Salt bridges: C:E.215

12 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 2 residues within 4Å: Chain A: H.586 Ligands: ACP.8 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.586 MG.6: 4 residues within 4Å: Chain A: T.500, T.522, E.558 Ligands: ACP.8 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:T.500, A:T.522, A:E.558 MG.7: 3 residues within 4Å: Chain A: D.431, E.450 Ligands: ACP.9 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.431, A:E.450 MG.10: 2 residues within 4Å: Chain B: H.586 Ligands: ACP.13 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.586 MG.11: 4 residues within 4Å: Chain B: T.500, T.522, E.558 Ligands: ACP.13 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:T.500, B:T.522, B:E.558 MG.12: 3 residues within 4Å: Chain B: D.431, E.450 Ligands: ACP.14 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.431, B:E.450 MG.15: 2 residues within 4Å: Chain C: H.586 Ligands: ACP.18 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.586 MG.16: 4 residues within 4Å: Chain C: T.500, T.522, E.558 Ligands: ACP.18 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:T.500, C:T.522, C:E.558 MG.17: 3 residues within 4Å: Chain C: D.431, E.450 Ligands: ACP.19 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.431, C:E.450 MG.20: 2 residues within 4Å: Chain D: H.586 Ligands: ACP.23 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:H.586 MG.21: 4 residues within 4Å: Chain D: T.500, T.522, E.558 Ligands: ACP.23 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:T.500, D:T.522, D:E.558 MG.22: 3 residues within 4Å: Chain D: D.431, E.450 Ligands: ACP.24 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.431, D:E.450

8 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)

ACP.8: 19 residues within 4Å: Chain A: T.496, N.497, G.498, K.499, T.500, T.501, T.522, E.558, N.581, F.692, N.696, R.731, D.745, A.751, G.752, A.755, V.756 Ligands: MG.5, MG.6 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.497, A:G.498, A:K.499, A:K.499, A:T.500, A:T.501, A:N.696, A:D.745 Salt bridges: A:R.731 ACP.9: 15 residues within 4Å: Chain A: K.220, P.235, V.259, K.261, E.300, R.301, Y.302, Y.303, D.307, T.392, D.431, V.433, V.449, E.450 Ligands: MG.7 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.220, A:K.261, A:E.300, A:Y.303, A:D.307, A:D.307, A:E.450 Salt bridges: A:K.261 ACP.13: 19 residues within 4Å: Chain B: T.496, N.497, G.498, K.499, T.500, T.501, T.522, E.558, N.581, F.692, N.696, R.731, D.745, A.751, G.752, A.755, V.756 Ligands: MG.10, MG.11 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:N.497, B:G.498, B:K.499, B:K.499, B:T.500, B:T.501, B:T.501, B:N.696, B:D.745 Salt bridges: B:R.731 ACP.14: 15 residues within 4Å: Chain B: K.220, P.235, V.259, K.261, E.300, R.301, Y.302, Y.303, D.307, T.392, D.431, V.433, V.449, E.450 Ligands: MG.12 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:K.220, B:K.261, B:E.300, B:E.300, B:Y.303, B:D.307, B:E.450 Salt bridges: B:K.261 ACP.18: 19 residues within 4Å: Chain C: T.496, N.497, G.498, K.499, T.500, T.501, T.522, E.558, N.581, F.692, N.696, R.731, D.745, A.751, G.752, A.755, V.756 Ligands: MG.15, MG.16 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:N.497, C:G.498, C:K.499, C:K.499, C:T.500, C:T.501, C:T.501, C:N.696, C:D.745 Salt bridges: C:R.731 ACP.19: 15 residues within 4Å: Chain C: K.220, P.235, V.259, K.261, E.300, R.301, Y.302, Y.303, D.307, T.392, D.431, V.433, V.449, E.450 Ligands: MG.17 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:K.220, C:K.261, C:E.300, C:E.300, C:Y.303, C:D.307, C:E.450 Salt bridges: C:K.261 ACP.23: 19 residues within 4Å: Chain D: T.496, N.497, G.498, K.499, T.500, T.501, T.522, E.558, N.581, F.692, N.696, R.731, D.745, A.751, G.752, A.755, V.756 Ligands: MG.20, MG.21 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:N.497, D:G.498, D:K.499, D:K.499, D:T.500, D:T.501, D:N.696, D:D.745 Salt bridges: D:R.731 ACP.24: 15 residues within 4Å: Chain D: K.220, P.235, V.259, K.261, E.300, R.301, Y.302, Y.303, D.307, T.392, D.431, V.433, V.449, E.450 Ligands: MG.22 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:K.220, D:K.261, D:E.300, D:Y.303, D:D.307, D:D.307, D:E.450 Salt bridges: D:K.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharon, I. et al., Structures and function of the amino acid polymerase cyanophycin synthetase. Nat.Chem.Biol. (2021)

Release Date

2021-08-18

Peptides

Cyanophycin synthase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Cyanophycin synthase

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