SMTL ID : 7li4.1

Structure of LRRK2 after symmetry expansion

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 18 residues within 4Å: Chain A: T.1343, G.1344, S.1345, G.1346, K.1347, T.1348, T.1349, Q.1365, A.1367, T.1368, F.1395, G.1397, T.1452, H.1453, D.1455, N.1489, A.1490, T.1491 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:T.1343, A:G.1344, A:S.1345, A:K.1347, A:T.1348, A:T.1349, A:T.1368, A:T.1368, A:F.1395, A:G.1397 Salt bridges: A:K.1347, A:D.1455 pi-Cation interactions: A:H.1453

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 11 residues within 4Å: Chain A: D.1887, G.1888, S.1892, V.1893, M.1947, E.1948, L.1949, A.1950, S.1954, H.1998, L.2001 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.1948, A:A.1950 Salt bridges: A:K.1906

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Myasnikov, A. et al., Structural analysis of the full-length human LRRK2. Cell (2021)

Release Date

2021-06-16

Peptides

Leucine-rich repeat serine/threonine-protein kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leucine-rich repeat serine/threonine-protein kinase 2

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