SMTL ID : 7luy.2 (2 other biounits)

Crystal Structure of guanylate kinase from Bartonella henselae str. Houston-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.142, H.193, S.196 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.196, A:S.196 Water bridges: A:K.142, A:K.142, A:R.195, A:R.195 Salt bridges: A:K.142, A:H.193 SO4.4: 8 residues within 4Å: Chain B: S.47, G.50, A.51, G.52, K.53, S.54, R.168, R.172 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.47, B:S.47, B:G.50, B:G.52, B:K.53, B:S.54 Salt bridges: B:R.172 SO4.5: 2 residues within 4Å: Chain B: H.193, S.196 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.196 Water bridges: B:R.195, B:R.195 Salt bridges: B:H.193

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: R.99 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.99 EDO.3: 2 residues within 4Å: Chain A: H.111, N.186 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.186 EDO.6: 3 residues within 4Å: Chain B: T.55, R.168, R.171 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.55, B:R.171, B:R.171 EDO.7: 4 residues within 4Å: Chain B: Y.170, D.175, S.176, Q.177 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.175 EDO.8: 4 residues within 4Å: Chain A: N.235 Chain B: Q.192, W.194, R.195 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.195, B:R.195, A:N.235, A:N.235 EDO.9: 5 residues within 4Å: Chain B: T.152, D.198, Y.199, E.220, K.223 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.199, B:K.223 Water bridges: B:T.152, B:Y.199, B:R.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Crystal Structure of guanylate kinase from Bartonella henselae str. Houston-1. to be published

Release Date

2021-03-17

Peptides

Guanylate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
E

Guanylate kinase

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