SMTL ID : 7m5u.1

Crystal structure of human MPP8 chromodomain in complex with peptidomimetic ligand UNC5246

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

1 x MN1- PHE- ALA- PHE- 5T3- SER- MOH: UNC5246(Non-covalent)

MN1-PHE-ALA-PHE-5T3-SER-MOH.1: 14 residues within 4Å: Chain A: D.3, V.4, F.5, E.6, V.7, W.26, Y.29, D.33, T.35, E.37, H.41, D.44, C.45, E.47 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:V.4, A:V.4, A:F.5, A:F.5, A:E.6, A:V.7, A:W.26, A:W.26, A:W.26, A:Y.29, A:D.33 Hydrogen bonds: A:D.3, A:F.5, A:F.5, A:V.7, A:V.7, A:E.37, A:H.41, A:H.41, A:D.44, A:D.44, A:E.47 pi-Cation interactions: A:F.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Waybright, J.M. et al., A Peptidomimetic Ligand Targeting the Chromodomain of MPP8 Reveals HRP2's Association with the HUSH Complex. Acs Chem.Biol. (2021)

Release Date

2021-09-01

Peptides

M-phase phosphoprotein 8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

M-phase phosphoprotein 8

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