- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.41 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x YTD: 6-({[(1S)-1-hydroxy-2-methyl-1-phenylpropan-2-yl]amino}methyl)-1-methyl-3,4-dihydroquinolin-2(1H)-one(Non-covalent)
- 12 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
OLC.2: 7 residues within 4Å:- Chain A: F.82, P.105, I.108, H.112
- Chain B: M.114, I.118
- Ligands: OLC.4
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:F.82, A:P.105, A:P.105, A:H.112, B:I.118
OLC.3: 4 residues within 4Å:- Chain A: L.80, V.81, P.85
- Ligands: OLC.6
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:P.85
OLC.4: 8 residues within 4Å:- Chain A: F.82, P.85, F.86, I.89, W.101, P.105
- Ligands: OLC.2, OLC.6
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:F.86, A:F.86, A:I.89, A:W.101, A:P.105
OLC.5: 2 residues within 4Å:- Chain A: A.12, L.16
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:L.16
OLC.6: 4 residues within 4Å:- Chain A: P.85, I.89
- Ligands: OLC.3, OLC.4
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:P.85
OLC.7: 3 residues within 4Å:- Chain A: W.18, Y.92, F.95
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:W.18, A:Y.92
OLC.9: 6 residues within 4Å:- Chain A: S.122, L.126
- Chain B: A.70, K.73, S.74, F.77
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:L.126, B:A.70, B:K.73, B:F.77
OLC.11: 3 residues within 4Å:- Chain B: P.85, I.89
- Ligands: OLC.14
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:I.89
OLC.12: 3 residues within 4Å:- Chain B: Y.92, F.95, K.96
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:Y.92, B:Y.92, B:F.95, B:K.96
OLC.13: 5 residues within 4Å:- Chain B: L.32, L.33, L.44, Y.45, L.80
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:L.32, B:L.33, B:Y.45, B:L.80
OLC.14: 6 residues within 4Å:- Chain A: M.114
- Chain B: F.82, F.86, I.108, H.112
- Ligands: OLC.11
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:F.82, B:F.86, B:F.86
OLC.15: 5 residues within 4Å:- Chain B: L.10, G.11, G.15, F.19, I.162
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:F.19, B:I.162
- 1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Alon, A. et al., Structures of the sigma 2 receptor enable docking for bioactive ligand discovery. Nature (2021)
- Release Date
- 2021-12-15
- Peptides
- Sigma intracellular receptor 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.41 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x YTD: 6-({[(1S)-1-hydroxy-2-methyl-1-phenylpropan-2-yl]amino}methyl)-1-methyl-3,4-dihydroquinolin-2(1H)-one(Non-covalent)
- 12 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
- 1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Alon, A. et al., Structures of the sigma 2 receptor enable docking for bioactive ligand discovery. Nature (2021)
- Release Date
- 2021-12-15
- Peptides
- Sigma intracellular receptor 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.