SMTL ID : 7m9h.1

HIV-1 Protease (I84V) in Complex with LR2-20

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

homo-dimer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: L.19, K.20, E.21, E.34, N.83 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.21, A:N.83 Water bridges: A:K.20 Salt bridges: A:K.20 SO4.2: 5 residues within 4Å: Chain A: K.14, I.15, G.16, G.17, L.63 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.17 Water bridges: A:K.14, A:G.16, A:G.16, A:L.63 Salt bridges: A:K.14 SO4.4: 3 residues within 4Å: Chain B: Q.18, M.36, N.37 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.18, B:N.37, B:N.37 SO4.5: 3 residues within 4Å: Chain B: G.68, H.69, K.70 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.70 Water bridges: B:H.69 SO4.6: 4 residues within 4Å: Chain A: R.87 Chain B: K.7, R.8, L.10 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.8, B:R.8 Water bridges: B:R.8, A:R.87

1 x NJG: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(2S,3R)-4-{({4-[(1R)-1,2-dihydroxyethyl]phenyl}sulfonyl)[(2S)-2-methylbutyl]amino}-3-hydroxy-1-phenylbutan-2-yl]carbamate(Non-covalent)

NJG.3: 31 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, L.76, P.81, V.82, V.84 Chain B: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, V.84 21 PLIP interactions: 10 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:A.28, A:V.32, A:I.47, A:P.81, A:V.82, B:P.81, B:V.82 Hydrogen bonds: A:D.29, A:D.29, A:D.30, B:D.25, B:G.27, B:G.27, B:D.29, B:D.30, B:D.30 Water bridges: A:I.50, B:R.8, B:I.50 Salt bridges: A:D.25, B:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lockbaum, G.J. et al., HIV-1 Protease (I84V) in Complex with LR2-20. To Be Published

Release Date

2022-04-27

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Protease

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