SMTL ID : 7m9i.1

HIV-1 Protease (I84V) in Complex with LR2-26

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

homo-dimer

Ligands

1 x NJ1: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(2S,3R)-4-[({4-[(1R)-1,2-dihydroxyethyl]phenyl}sulfonyl)(2-ethylbutyl)amino]-3-hydroxy-1-phenylbutan-2-yl}carbamate(Non-covalent)

NJ1.1: 33 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, K.45, I.47, G.48, G.49, I.50, L.76, P.81, V.82, V.84 Chain B: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, T.80, P.81, V.82, V.84 28 PLIP interactions: 14 interactions with chain A, 14 interactions with chain B Hydrophobic interactions: A:L.23, A:A.28, A:V.32, A:I.47, A:P.81, A:V.82, B:L.23, B:I.47, B:I.50, B:V.84 Hydrogen bonds: A:D.29, A:D.30, A:D.30, A:D.30, B:D.25, B:G.27, B:G.27, B:D.29, B:D.30, B:D.30 Water bridges: A:G.27, A:G.27, A:I.50, B:R.8, B:D.29, B:I.50 Salt bridges: A:D.25, B:D.25

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain B: P.1, H.69 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:P.1 Water bridges: B:H.69, B:H.69, B:H.69 Salt bridges: B:H.69 SO4.3: 3 residues within 4Å: Chain B: K.7, R.8, L.10 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.8 Water bridges: B:R.8, B:R.8, B:R.8, A:R.87 Salt bridges: B:R.8 SO4.4: 3 residues within 4Å: Chain B: Q.18, M.36, N.37 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.37, B:N.37 Water bridges: B:Q.18, B:Q.18 SO4.5: 2 residues within 4Å: Chain B: H.69, K.70 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lockbaum, G.J. et al., HIV-1 Protease (I84V) in Complex with LR2-26. To Be Published

Release Date

2022-04-27

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Protease

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