SMTL ID : 7ma1.1

HIV-1 Protease (I84V) in Complex with GRL-98065

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: L.19, K.20, E.21, E.34, N.83 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:L.19, A:E.21, A:N.83 Water bridges: A:K.20, A:K.20, A:E.34, A:E.34, A:E.34, A:E.34 Salt bridges: A:K.20 SO4.2: 4 residues within 4Å: Chain A: G.73, T.74, N.88, Q.92 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.74, A:T.74, A:N.88 Water bridges: A:Q.92, A:Q.92, A:Q.92 SO4.3: 3 residues within 4Å: Chain A: Q.18, M.36, N.37 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.18, A:N.37 SO4.4: 4 residues within 4Å: Chain A: K.14, I.15, G.16, G.17 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.17 Water bridges: A:K.14, A:K.14, A:G.16, A:G.16, A:L.63 Salt bridges: A:K.14 SO4.5: 4 residues within 4Å: Chain A: R.87 Chain B: K.7, R.8, L.10 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.8 Water bridges: B:R.8, A:R.87 Salt bridges: B:R.8 SO4.6: 3 residues within 4Å: Chain B: Q.18, M.36, N.37 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.37, B:N.37 Water bridges: B:Q.18, B:Q.18, B:Q.18 SO4.7: 3 residues within 4Å: Chain A: F.99 Chain B: P.1, H.69 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:P.1 Water bridges: B:H.69, B:H.69 Salt bridges: B:H.69 SO4.8: 4 residues within 4Å: Chain B: K.20, E.21, E.34, N.83 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.21, B:E.34, B:N.83 Water bridges: B:K.20, B:K.20 Salt bridges: B:K.20 SO4.9: 3 residues within 4Å: Chain B: G.68, H.69, K.70 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.70 Salt bridges: B:H.69 SO4.10: 3 residues within 4Å: Chain B: K.14, E.65, K.70 4 PLIP interactions: 4 interactions with chain B Water bridges: B:E.65, B:E.65 Salt bridges: B:K.14, B:K.70

1 x 065: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(2S,3R)-3-HYDROXY-4-(N-ISOBUTYLBENZO[D][1,3]DIOXOLE-5-SULFONAMIDO)-1-PHENYLBUTAN-2-YLCARBAMATE(Non-covalent)

065.11: 29 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, V.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, V.84 20 PLIP interactions: 9 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:A.28, A:V.32, A:P.81, A:V.82, B:L.23, B:V.84 Hydrogen bonds: A:D.29, A:D.30, B:D.25, B:G.27, B:G.27, B:D.29, B:D.30, B:D.30 Water bridges: A:G.48, A:I.50, B:D.29, B:I.50 Salt bridges: A:D.25, B:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lockbaum, G.J. et al., HIV-1 Protease (I84V) in Complex with GRL-98065. To Be Published

Release Date

2022-04-27

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Protease

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