SMTL ID : 7ma8.1

HIV-1 Protease (I84V) in Complex with UMass8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain B: H.69, K.70 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.68, B:K.70 SO4.2: 3 residues within 4Å: Chain B: Q.18, M.36, N.37 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.37 Water bridges: B:Q.18, B:Q.18, B:Q.18, B:Q.18

1 x F53: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(1S,2R)-1-benzyl-3-[(2-ethylbutyl){[4-(hydroxymethyl)phenyl]sulfonyl}amino]-2-hydroxypropyl}carbamate(Non-covalent)

F53.3: 32 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, K.45, I.47, G.48, G.49, I.50, L.76, P.81, V.82, V.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, T.80, P.81, V.82, V.84 23 PLIP interactions: 9 interactions with chain B, 14 interactions with chain A Hydrophobic interactions: B:V.82, B:V.84, A:A.28, A:V.32, A:I.47, A:I.50, A:P.81, A:V.82 Hydrogen bonds: B:G.27, B:G.27, B:D.29, B:D.30, B:D.30, A:D.25, A:D.29, A:D.30, A:D.30 Water bridges: B:I.50, A:D.29, A:D.29, A:I.50 Salt bridges: B:D.25, A:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lockbaum, G.J. et al., HIV-1 Protease (I84V) in Complex with UMass8. To Be Published

Release Date

2022-11-09

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Protease

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