SMTL ID : 7mab.1

HIV-1 Protease (I84V) in Complex with GS-8374

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

homo-dimer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: K.14, I.15, G.16, G.17, L.63 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.17 Water bridges: A:K.14, A:G.16, A:G.16, A:L.63 Salt bridges: A:K.14 SO4.2: 3 residues within 4Å: Chain B: G.68, H.69, K.70 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.68, B:K.70 Water bridges: B:H.69, B:K.70 Salt bridges: B:K.70 SO4.3: 4 residues within 4Å: Chain A: R.87 Chain B: K.7, R.8, L.10 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Water bridges: A:R.87, B:R.8 Hydrogen bonds: B:R.8 SO4.4: 3 residues within 4Å: Chain B: Q.18, M.36, N.37 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.18, B:N.37, B:N.37 SO4.5: 1 residues within 4Å: Chain B: Q.58 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.58

1 x KGQ: DIETHYL ({4-[(2S,3R)-2-({[(3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YLOXY]CARBONYL}AMINO)-3-HYDROXY-4-{ISOBUTYL[(4-METHOXYPHENYL)SULFONYL]AMINO}BUTYL]PHENOXY}METHYL)PHOSPHONATE(Non-covalent)

KGQ.6: 34 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, K.45, I.47, G.48, G.49, I.50, L.76, P.81, V.82, V.84 Chain B: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, G.52, F.53, P.81, V.82, V.84 22 PLIP interactions: 11 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:A.28, A:V.32, A:P.81, A:P.81, A:V.82, B:L.23, B:F.53, B:V.82 Hydrogen bonds: A:D.29, A:D.30, A:D.30, B:D.25, B:G.27, B:G.27, B:D.29, B:D.30, B:D.30 Water bridges: A:R.8, A:I.50, B:I.50 Salt bridges: A:D.25, B:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lockbaum, G.J. et al., HIV-1 Protease (I84V) in Complex with GS-8374. To Be Published

Release Date

2022-04-27

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Protease

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