SMTL ID : 7mag.1

HIV-1 Protease (I84V) in Complex with PU3 (LR3-69)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-dimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain B: Q.18, K.20, M.36, N.37 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.37, B:N.37 SO4.2: 3 residues within 4Å: Chain B: G.68, H.69, K.70 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.68, B:K.70 SO4.3: 2 residues within 4Å: Chain B: P.1, H.69 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:P.1 Water bridges: B:H.69, B:H.69, B:H.69, B:H.69 Salt bridges: B:H.69

1 x XVP: diethyl ({4-[(2S,3R)-2-[({[(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl]oxy}carbonyl)amino]-3-hydroxy-4-({[4-(hydroxymethyl)phenyl]sulfonyl}[(2S)-2-methylbutyl]amino)butyl]phenoxy}methyl)phosphonate(Non-covalent)

XVP.4: 33 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, L.76, P.81, V.82, V.84 Chain B: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, G.52, F.53, P.81, V.82, V.84 19 PLIP interactions: 9 interactions with chain B, 10 interactions with chain A Hydrophobic interactions: B:L.23, B:F.53, A:A.28, A:V.32, A:P.81 Hydrogen bonds: B:G.27, B:G.27, B:G.27, B:D.29, B:D.30, A:D.29, A:D.30, A:D.30 Water bridges: B:I.50, A:D.29, A:D.29, A:I.50 Salt bridges: B:D.25, A:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lockbaum, G.J. et al., HIV-1 Protease in Complex with ligands. To Be Published

Release Date

2022-04-20

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Protease

Related Entries With Identical Sequence