SMTL ID : 7man.1

HIV-1 Protease (I84V) in Complex with PU9 (LR2-80)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: P.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.1 Water bridges: A:P.1 SO4.2: 5 residues within 4Å: Chain A: K.14, I.15, G.16, G.17, Q.18 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.17 Water bridges: A:K.14, A:G.16, A:G.16, A:L.63 Salt bridges: A:K.14 SO4.3: 4 residues within 4Å: Chain A: R.87 Chain B: K.7, R.8, L.10 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.8 Water bridges: B:R.8, B:R.8, A:R.87 Salt bridges: B:R.8 SO4.4: 3 residues within 4Å: Chain B: Q.18, M.36, N.37 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.37, B:N.37 Water bridges: B:Q.18, B:Q.18

1 x XW4: diethyl [(4-{(2S,3R)-4-{[(2H-1,3-benzodioxol-5-yl)sulfonyl](2-ethylbutyl)amino}-2-[({[(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl]oxy}carbonyl)amino]-3-hydroxybutyl}phenoxy)methyl]phosphonate(Non-covalent)

XW4.5: 33 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, K.45, I.47, G.48, G.49, I.50, P.81, V.82, V.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, G.52, F.53, T.80, P.81, V.82, V.84 24 PLIP interactions: 9 interactions with chain B, 15 interactions with chain A Hydrophobic interactions: B:F.53, B:V.82, A:A.28, A:V.32, A:I.50, A:P.81, A:P.81, A:V.82 Hydrogen bonds: B:G.27, B:G.27, B:D.29, B:D.30, B:D.30, A:D.25, A:D.30, A:D.30 Water bridges: B:I.50, A:R.8, A:R.8, A:D.29, A:G.48, A:I.50 Salt bridges: B:D.25, A:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lockbaum, G.J. et al., HIV-1 Protease (I84V) in Complex with PU9 (LR2-80). To Be Published

Release Date

2022-04-27

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Protease

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