SMTL ID : 7mil.1

Mouse TRPV3 in MSP2N2 nanodiscs, sensitized state at 42 degrees Celsius

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

8 x POV: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate(Non-covalent)

POV.1: 16 residues within 4Å: Chain A: F.590, L.591, Y.594, L.598, S.626, D.627, V.629, F.633, T.636 Chain D: I.652, L.655, F.656, I.659, I.663, L.664, V.667 15 PLIP interactions: 9 interactions with chain A, 6 interactions with chain D Hydrophobic interactions: A:F.590, A:L.591, A:Y.594, A:L.598, A:V.629, A:F.633, A:F.633, A:T.636, D:L.655, D:F.656, D:F.656, D:I.659, D:L.664, D:V.667 Salt bridges: A:D.627 POV.2: 14 residues within 4Å: Chain A: Y.439, M.440, S.444, W.493, C.496, I.497, K.500, E.501, H.523, F.526, Y.564, Y.565, M.706, L.707 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.439, A:Y.439, A:W.493, A:L.707 Hydrogen bonds: A:S.444 Salt bridges: A:K.500, A:K.500, A:E.501, A:E.702 POV.3: 16 residues within 4Å: Chain A: I.652, L.655, F.656, I.659, I.663, L.664, V.667 Chain B: F.590, L.591, Y.594, L.598, S.626, D.627, V.629, F.633, T.636 17 PLIP interactions: 8 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:L.655, A:F.656, A:F.656, A:I.659, A:I.659, A:I.663, A:L.664, A:V.667, B:F.590, B:L.591, B:Y.594, B:L.598, B:V.629, B:F.633, B:F.633, B:T.636 Salt bridges: B:D.627 POV.4: 14 residues within 4Å: Chain B: Y.439, M.440, S.444, W.493, C.496, I.497, K.500, E.501, H.523, F.526, Y.564, Y.565, M.706, L.707 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:Y.439, B:Y.439, B:W.493, B:L.707 Hydrogen bonds: B:S.444 Salt bridges: B:K.500, B:K.500, B:E.501, B:E.702 POV.5: 14 residues within 4Å: Chain B: I.652, L.655, F.656, I.659, I.663, V.667 Chain C: F.590, L.591, Y.594, L.598, S.626, D.627, F.633, T.636 13 PLIP interactions: 7 interactions with chain C, 6 interactions with chain B Hydrophobic interactions: C:F.590, C:L.591, C:Y.594, C:L.598, C:F.633, C:T.636, B:L.655, B:F.656, B:F.656, B:I.659, B:I.663, B:V.667 Salt bridges: C:D.627 POV.6: 13 residues within 4Å: Chain C: Y.439, M.440, S.444, W.493, I.497, K.500, E.501, H.523, F.526, Y.564, Y.565, M.706, L.707 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:Y.439, C:Y.439, C:W.493, C:L.707 Hydrogen bonds: C:S.444 Salt bridges: C:K.500, C:K.500, C:E.501, C:E.702 POV.8: 17 residues within 4Å: Chain C: I.652, L.655, F.656, I.659, T.660, I.663, L.664, V.667 Chain D: F.590, L.591, Y.594, L.598, S.626, D.627, V.629, F.633, T.636 16 PLIP interactions: 7 interactions with chain C, 9 interactions with chain D Hydrophobic interactions: C:L.655, C:F.656, C:I.659, C:I.659, C:I.663, C:L.664, C:V.667, D:F.590, D:L.591, D:Y.594, D:L.598, D:V.629, D:F.633, D:F.633, D:T.636 Salt bridges: D:D.627 POV.9: 14 residues within 4Å: Chain D: Y.439, M.440, S.444, W.493, C.496, I.497, K.500, E.501, H.523, F.526, Y.564, Y.565, M.706, L.707 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:Y.439, D:W.493, D:L.707 Hydrogen bonds: D:S.444 Salt bridges: D:K.500, D:K.500, D:E.501, D:E.702

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nadezhdin, K.D. et al., Structural mechanism of heat-induced opening of a temperature-sensitive TRP channel. Nat.Struct.Mol.Biol. (2021)

Release Date

2021-07-21

Peptides

Transient receptor potential cation channel subfamily V member 3: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 3

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