SMTL ID : 7mmp.1 (3 other biounits)

Crystal Structure of the Class Ie Ribonucleotide Reductase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: V.216, F.220, N.287 Chain B: N.97, L.125 Ligands: FMN.2 No protein-ligand interaction detected (PLIP)

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.2: 22 residues within 4Å: Chain A: R.48, F.220 Chain B: S.14, T.15, S.17, N.18, N.19, T.20, P.53, T.54, Y.55, S.56, G.57, G.58, G.96, N.97, F.100, S.103, F.104, A.105, L.125 Ligands: CA.1 22 PLIP interactions: 20 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Y.55, B:Y.55, B:F.100, A:R.48, A:F.220 Hydrogen bonds: B:T.15, B:N.19, B:N.19, B:T.20, B:T.54, B:T.54, B:Y.55, B:S.56, B:G.57, B:G.58, B:N.97, B:S.103, B:A.105, B:L.125 Water bridges: B:S.95 pi-Stacking: B:F.100, B:F.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Palowitch, G.M. et al., Ribonucleotide Reductase. To be published

Release Date

2022-05-04

Peptides

Ribonucleoside-diphosphate reductase: A
Protein NrdI: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Ribonucleoside-diphosphate reductase

Protein NrdI

Related Entries With Identical Sequence