SMTL ID : 7mmq.4 (3 other biounits)

Crystal Structure of the Class Ie Ribonucleotide Reductase Beta-NrdI complex from Aerococcus urinae in Reduced Hydroquinone Form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: Y.11, S.16, E.19, R.30, S.105, L.106, T.107, E.108, Q.111 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.16, A:R.30, A:R.30, A:S.105, A:Q.111

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.2: 20 residues within 4Å: Chain A: E.44, R.48, F.220 Chain B: S.14, T.15, S.17, N.18, N.19, T.20, P.53, T.54, Y.55, S.56, G.96, N.97, F.100, S.103, F.104, A.105, L.125 24 PLIP interactions: 20 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:Y.55, B:Y.55, B:F.100, A:E.44, A:R.48, A:F.220 Hydrogen bonds: B:T.15, B:N.19, B:N.19, B:T.20, B:T.20, B:T.54, B:T.54, B:Y.55, B:S.56, B:N.97, B:S.103, B:A.105, B:L.125, A:R.48 Water bridges: B:S.95, B:S.95 pi-Stacking: B:F.100, B:F.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Palowitch, G.M. et al., Ribonucleotide Reductase. To be published

Release Date

2022-05-04

Peptides

Ribonucleoside-diphosphate reductase: A
Protein NrdI: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
H

Ribonucleoside-diphosphate reductase

Protein NrdI

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