SMTL ID : 7mx7.1

PRMT5:MEP50 complexed with inhibitor PF-06939999

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

hetero-4-4-mer

Ligands

4 x ZR1: (1S,2S,3S,5R)-3-{[6-(difluoromethyl)-5-fluoro-1,2,3,4-tetrahydroisoquinolin-8-yl]oxy}-5-(4-methyl-7H-pyrrolo[2,3-d]pyrimidin-7-yl)cyclopentane-1,2-diol(Non-covalent)

ZR1.1: 22 residues within 4Å: Chain A: P.314, L.315, Y.324, F.327, K.333, Y.334, G.365, A.366, G.367, R.368, P.370, E.392, K.393, S.418, D.419, M.420, R.421, E.435, L.436, L.437, E.444, C.449 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.327, A:F.327, A:K.393, A:L.436 Hydrogen bonds: A:Y.324, A:G.367, A:K.393, A:K.393, A:M.420, A:E.435, A:L.437 Water bridges: A:L.319, A:N.394 pi-Cation interactions: A:K.393 ZR1.2: 22 residues within 4Å: Chain C: P.314, L.315, Y.324, F.327, K.333, Y.334, G.365, A.366, G.367, R.368, P.370, E.392, K.393, S.418, D.419, M.420, R.421, E.435, L.436, L.437, E.444, C.449 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:F.327, C:F.327, C:K.393, C:L.436 Hydrogen bonds: C:Y.324, C:G.367, C:K.393, C:K.393, C:M.420, C:E.435, C:L.437 Water bridges: C:L.319, C:N.394 pi-Cation interactions: C:K.393 ZR1.3: 22 residues within 4Å: Chain E: P.314, L.315, Y.324, F.327, K.333, Y.334, G.365, A.366, G.367, R.368, P.370, E.392, K.393, S.418, D.419, M.420, R.421, E.435, L.436, L.437, E.444, C.449 13 PLIP interactions: 13 interactions with chain E Hydrophobic interactions: E:F.327, E:F.327, E:K.393, E:L.436 Hydrogen bonds: E:G.367, E:K.393, E:K.393, E:M.420, E:E.435, E:L.437 Water bridges: E:L.319, E:N.394 pi-Cation interactions: E:K.393 ZR1.4: 22 residues within 4Å: Chain G: P.314, L.315, Y.324, F.327, K.333, Y.334, G.365, A.366, G.367, R.368, P.370, E.392, K.393, S.418, D.419, M.420, R.421, E.435, L.436, L.437, E.444, C.449 13 PLIP interactions: 13 interactions with chain G Hydrophobic interactions: G:F.327, G:F.327, G:K.393, G:L.436 Hydrogen bonds: G:G.367, G:K.393, G:K.393, G:M.420, G:E.435, G:L.437 Water bridges: G:L.319, G:N.394 pi-Cation interactions: G:K.393

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jensen-Pergakes, K. et al., SAM-Competitive PRMT5 Inhibitor PF-06939999 Demonstrates Antitumor Activity in Splicing Dysregulated NSCLC with Decreased Liability of Drug Resistance. Mol.Cancer Ther. (2022)

Release Date

2021-11-17

Peptides

Protein arginine N-methyltransferase 5: ACEG
Methylosome protein 50: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

G
A

B
B

D
B

F
B

H
B

Protein arginine N-methyltransferase 5

Methylosome protein 50

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