- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 4 x 01: (3~{S})-2-[(5-azanyl-6-fluoranyl-1~{H}-pyrrolo[3,2-b]pyridin-2-yl)methyl]-6-fluoranyl-1'-[(4-fluorophenyl)methyl]spiro[isoindole-3,3'-pyrrolidine]-1,2'-dione
01.1: 18 residues within 4Å:- Chain A: F.300, Y.304, Q.309, S.310, L.312, F.327, K.333, E.435, L.437, G.438, S.439, E.444, V.503, F.577, S.578, W.579, F.580
- Ligands: MTA.2
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:Y.304, A:L.312, A:L.312, A:F.327
- Hydrogen bonds: A:L.312, A:L.437, A:E.444, A:F.580
- pi-Stacking: A:F.327, A:W.579, A:F.580
01.4: 18 residues within 4Å:- Chain C: F.300, Y.304, Q.309, S.310, L.312, F.327, K.333, E.435, L.437, G.438, S.439, E.444, V.503, F.577, S.578, W.579, F.580
- Ligands: MTA.5
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:Y.304, C:L.312, C:L.312, C:F.327
- Hydrogen bonds: C:L.312, C:L.437, C:E.444, C:F.580
- pi-Stacking: C:F.327, C:W.579, C:F.580
01.7: 18 residues within 4Å:- Chain E: F.300, Y.304, Q.309, S.310, L.312, F.327, K.333, E.435, L.437, G.438, S.439, E.444, V.503, F.577, S.578, W.579, F.580
- Ligands: MTA.8
11 PLIP interactions:11 interactions with chain E- Hydrophobic interactions: E:Y.304, E:L.312, E:L.312, E:F.327
- Hydrogen bonds: E:L.312, E:L.437, E:E.444, E:F.580
- pi-Stacking: E:F.327, E:W.579, E:F.580
01.10: 18 residues within 4Å:- Chain G: F.300, Y.304, Q.309, S.310, L.312, F.327, K.333, E.435, L.437, G.438, S.439, E.444, V.503, F.577, S.578, W.579, F.580
- Ligands: MTA.11
11 PLIP interactions:11 interactions with chain G- Hydrophobic interactions: G:Y.304, G:L.312, G:L.312, G:F.327
- Hydrogen bonds: G:L.312, G:L.437, G:E.444, G:F.580
- pi-Stacking: G:F.327, G:W.579, G:F.580
- 4 x MTA: 5'-DEOXY-5'-METHYLTHIOADENOSINE(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 5 residues within 4Å:- Chain A: F.40, T.80, V.83, P.120, Q.263
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.80, A:Q.263
SO4.6: 5 residues within 4Å:- Chain C: F.40, T.80, V.83, P.120, Q.263
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:T.80, C:Q.263
SO4.9: 5 residues within 4Å:- Chain E: F.40, T.80, V.83, P.120, Q.263
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:T.80, E:Q.263
SO4.12: 5 residues within 4Å:- Chain G: F.40, T.80, V.83, P.120, Q.263
2 PLIP interactions:2 interactions with chain G- Hydrogen bonds: G:T.80, G:Q.263
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Smith, J.M. et al., Discovery and In Vivo Efficacy of AZ-PRMT5i-1, a Novel PRMT5 Inhibitor with High MTA Cooperativity. J.Med.Chem. (2024)
- Release Date
- 2024-08-14
- Peptides
- Protein arginine N-methyltransferase 5, N-terminally processed: ACEG
Methylosome protein WDR77: BDFH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AG
AB
BD
BF
BH
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 4 x 01: (3~{S})-2-[(5-azanyl-6-fluoranyl-1~{H}-pyrrolo[3,2-b]pyridin-2-yl)methyl]-6-fluoranyl-1'-[(4-fluorophenyl)methyl]spiro[isoindole-3,3'-pyrrolidine]-1,2'-dione
- 4 x MTA: 5'-DEOXY-5'-METHYLTHIOADENOSINE(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Smith, J.M. et al., Discovery and In Vivo Efficacy of AZ-PRMT5i-1, a Novel PRMT5 Inhibitor with High MTA Cooperativity. J.Med.Chem. (2024)
- Release Date
- 2024-08-14
- Peptides
- Protein arginine N-methyltransferase 5, N-terminally processed: ACEG
Methylosome protein WDR77: BDFH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AG
AB
BD
BF
BH
B