SMTL ID : 7mxn.1

PRMT5(M420T mutant):MEP50 complexed with inhibitor PF-06939999

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZR1: (1S,2S,3S,5R)-3-{[6-(difluoromethyl)-5-fluoro-1,2,3,4-tetrahydroisoquinolin-8-yl]oxy}-5-(4-methyl-7H-pyrrolo[2,3-d]pyrimidin-7-yl)cyclopentane-1,2-diol(Non-covalent)

ZR1.1: 23 residues within 4Å: Chain A: P.314, L.315, Y.324, F.327, K.333, Y.334, G.365, A.366, G.367, R.368, P.370, E.392, K.393, N.394, S.418, D.419, T.420, R.421, E.435, L.436, L.437, E.444, C.449 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.327, A:F.327, A:K.393, A:L.436 Hydrogen bonds: A:P.314, A:Y.324, A:G.367, A:K.393, A:T.420, A:E.435, A:L.437 Water bridges: A:K.393 pi-Cation interactions: A:K.393 Halogen bonds: A:F.327, A:K.333

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jensen-Pergakes, K. et al., SAM-Competitive PRMT5 Inhibitor PF-06939999 Demonstrates Antitumor Activity in Splicing Dysregulated NSCLC with Decreased Liability of Drug Resistance. Mol.Cancer Ther. (2022)

Release Date

2021-11-17

Peptides

Protein arginine N-methyltransferase 5: A
Methylosome protein 50: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein arginine N-methyltransferase 5

Methylosome protein 50

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