SMTL ID : 7mzf.1

SARS-CoV-2 receptor binding domain bound to Fab PDI 37

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 4 residues within 4Å: Chain A: F.8, G.9, N.13, L.38 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: F.12, N.13, W.106 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.13

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain B: V.167, H.168 Chain C: T.164, E.165, Q.166, D.167, S.168 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:V.167, B:H.168, C:S.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wheatley, A.K. et al., Landscape of human antibody recognition of the SARS-CoV-2 receptor binding domain. Cell Rep (2021)

Release Date

2021-10-06

Peptides

Spike protein S1: A
PDI 37 heavy chain: B
PDI 37 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Spike protein S1

PDI 37 heavy chain

PDI 37 light chain

Related Entries With Identical Sequence