SMTL ID : 7mzn.1

SARS-CoV-2 receptor binding domain bound to Fab PDI 231

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 5 residues within 4Å: Chain A: F.8, G.9, N.13, V.37, L.38 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.16, K.114 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.16, A:K.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wheatley, A.K. et al., Landscape of human antibody recognition of the SARS-CoV-2 receptor binding domain. Cell Rep (2021)

Release Date

2021-10-06

Peptides

Spike protein S1: A
PDI 231 heavy chain: B
PDI 231 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Spike protein S1

PDI 231 heavy chain

PDI 231 light chain

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