SMTL ID : 7n4n.1

BACE-2 in complex with ligand 36

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.41 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 0BK: N-{3-[(2S,5R)-6-amino-2-(fluoromethyl)-5-(methanesulfonyl)-5-methyl-2,3,4,5-tetrahydropyridin-2-yl]-4-fluorophenyl}-6-methoxypyrimidine-4-carboxamide(Non-covalent)

0BK.1: 21 residues within 4Å: Chain A: G.15, R.16, G.17, Y.18, L.34, D.36, G.38, S.39, Y.75, F.112, W.119, I.122, Y.199, I.227, D.229, S.230, G.231, T.232, T.233, A.335 Ligands: EDO.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.75, A:W.119, A:W.119 Hydrogen bonds: A:D.36, A:G.231 Water bridges: A:W.119

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: Q.77, G.231, T.232, T.233, L.234, R.236 Ligands: 0BK.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.231, A:T.233 Water bridges: A:L.234 EDO.3: 6 residues within 4Å: Chain B: Q.40, V.94, Y.96, R.103, P.105, G.106 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.103, B:R.103, B:P.105 Water bridges: B:Q.40, B:Y.96 EDO.4: 3 residues within 4Å: Chain B: A.76, R.77, N.78 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.77, B:N.78 EDO.5: 4 residues within 4Å: Chain B: G.56, S.57, I.58, T.59 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.57, B:T.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rombouts, F.J.R. et al., JNJ-67569762, A 2-Aminotetrahydropyridine-Based Selective BACE1 Inhibitor Targeting the S3 Pocket: From Discovery to Clinical Candidate. J.Med.Chem. (2021)

Release Date

2021-10-06

Peptides

Beta-secretase 2: A
Xaperone: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Beta-secretase 2

Xaperone

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