SMTL ID : 7na1.1 (1 other biounit)

HDM2 in complex with compound 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x 1GI: 8-(1-benzothiophen-5-yl)-7-[(4-chlorophenyl)methyl]-6-{[(1R)-1-cyclopropylethyl]amino}-7H-purine-2-carboxylic acid(Non-covalent)

1GI.1: 10 residues within 4Å: Chain A: L.38, L.41, G.42, I.45, Y.51, V.77, K.78, H.80, I.83 Ligands: CIT.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.41, A:I.45, A:Y.51, A:V.77, A:H.80 Salt bridges: A:K.78, A:H.80 pi-Stacking: A:Y.51

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: N.63 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.63

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.3: 4 residues within 4Å: Chain A: Q.8, H.80, Y.84 Ligands: 1GI.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.8, A:H.80, A:Y.84 Salt bridges: A:H.80, A:H.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reutershan, M.H. et al., Discovery of MK-4688 : an Efficient Inhibitor of the HDM2-p53 Protein-Protein Interaction. J.Med.Chem. (2021)

Release Date

2021-11-10

Peptides

E3 ubiquitin-protein ligase Mdm2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase Mdm2

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