SMTL ID : 7na1.2 (1 other biounit)

HDM2 in complex with compound 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x 1GI: 8-(1-benzothiophen-5-yl)-7-[(4-chlorophenyl)methyl]-6-{[(1R)-1-cyclopropylethyl]amino}-7H-purine-2-carboxylic acid(Non-covalent)

1GI.1: 12 residues within 4Å: Chain A: L.38, L.41, G.42, I.45, M.46, Y.51, V.77, K.78, H.80, I.83, Y.84 Ligands: GOL.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.38, A:L.38, A:L.41, A:I.45, A:V.77, A:I.83, A:Y.84 Salt bridges: A:K.78, A:H.80

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: Y.51, D.52, H.57, I.58, V.77 Ligands: 1GI.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.52, A:D.52, A:H.57, A:I.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reutershan, M.H. et al., Discovery of MK-4688 : an Efficient Inhibitor of the HDM2-p53 Protein-Protein Interaction. J.Med.Chem. (2021)

Release Date

2021-11-10

Peptides

E3 ubiquitin-protein ligase Mdm2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E3 ubiquitin-protein ligase Mdm2

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