SMTL ID : 7nah.2 (1 other biounit)

Crystal structure of the TIR domain from human SARM1 in complex with 2AD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

1 x 1OF: [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(8-oxidanylidene-7~{H}-2,7-naphthyridin-2-yl)oxolan-2-yl]methyl hydrogen phosphate(Non-covalent)

1OF.1: 14 residues within 4Å: Chain A: F.9, I.10, S.11, Y.12, R.13, R.14, N.15, D.38, L.42, F.47, L.51, W.82, V.83, E.86 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.51, A:W.82 Hydrogen bonds: A:I.10, A:S.11, A:Y.12, A:R.14, A:R.14, A:D.38, A:E.86 Water bridges: A:R.13, A:R.13, A:N.15, A:D.81, A:W.82 Salt bridges: A:R.13 pi-Stacking: A:F.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, Y. et al., Structural basis of SARM1 activation, substrate recognition, and inhibition by small molecules. Mol.Cell (2022)

Release Date

2022-03-23

Peptides

Sterile alpha and TIR motif-containing protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Sterile alpha and TIR motif-containing protein 1

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