- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 3 x HUF: [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4S)-5-[5-methanoyl-7,8-dimethyl-2,4-bis(oxidanylidene)-1H-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate(Non-covalent)
- 1 x FDA: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE(Non-covalent)
FDA.3: 22 residues within 4Å:- Chain B: R.90, H.91, R.92, I.93, N.181, L.185, R.186, H.190, A.191
- Chain C: A.94, S.95, N.97, E.98, S.100
- Chain D: S.42, T.67, E.70, I.93, N.175, R.177
- Ligands: HUF.6, PEG.7
20 PLIP interactions:4 interactions with chain C, 12 interactions with chain B, 4 interactions with chain D- Hydrogen bonds: C:A.94, C:E.98, C:E.98, B:R.90, B:R.90, B:R.92, B:I.93, B:N.181, B:N.181, B:R.186, D:S.42, D:N.175, D:R.177
- Water bridges: C:R.102
- Hydrophobic interactions: B:L.185
- Salt bridges: B:H.91, B:H.91, B:R.92, B:R.92, D:R.177
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.5: 6 residues within 4Å:- Chain A: L.185
- Chain C: G.64, H.65, E.66, T.67
- Ligands: HUF.2
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:H.65, C:E.66, C:T.67, C:T.67
PEG.7: 6 residues within 4Å:- Chain B: L.185
- Chain D: G.64, H.65, E.66, T.67
- Ligands: FDA.3
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:E.66, D:T.67, D:T.67
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bou-Nader, C. et al., An enzymatic activation of formaldehyde for nucleotide methylation. Nat Commun (2021)
- Release Date
- 2021-07-21
- Peptides
- Flavin-dependent thymidylate synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 3 x HUF: [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4S)-5-[5-methanoyl-7,8-dimethyl-2,4-bis(oxidanylidene)-1H-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate(Non-covalent)
- 1 x FDA: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bou-Nader, C. et al., An enzymatic activation of formaldehyde for nucleotide methylation. Nat Commun (2021)
- Release Date
- 2021-07-21
- Peptides
- Flavin-dependent thymidylate synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D