SMTL ID : 7ni4.1

Human ATM kinase domain with bound M4076 inhibitor

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.1876, H.1895, C.1899, C.1900 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.1876, A:H.1895, A:C.1899, A:C.1900 ZN.3: 4 residues within 4Å: Chain B: H.1876, H.1895, C.1899, C.1900 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.1876, B:H.1895, B:C.1899, B:C.1900

2 x UGK: 8-(1,3-dimethylpyrazol-4-yl)-1-(3-fluoranyl-5-methoxy-pyridin-4-yl)-7-methoxy-3-methyl-imidazo[4,5-c]quinolin-2-one(Non-covalent)

UGK.2: 17 residues within 4Å: Chain A: A.2693, G.2694, P.2699, L.2715, K.2717, D.2725, Y.2755, L.2767, E.2768, W.2769, C.2770, T.2773, P.2775, Q.2874, L.2877, I.2888, D.2889 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.2715, A:L.2877, A:I.2888 Hydrogen bonds: A:K.2717, A:C.2770, A:T.2773 pi-Stacking: A:W.2769 UGK.4: 16 residues within 4Å: Chain B: G.2694, P.2699, L.2715, K.2717, D.2725, Y.2755, L.2767, E.2768, W.2769, C.2770, T.2773, P.2775, Q.2874, L.2877, I.2888, D.2889 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:L.2715, B:L.2877, B:I.2888 Hydrogen bonds: B:C.2770 pi-Stacking: B:W.2769, B:W.2769

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stakyte, K. et al., Molecular basis of human ATM kinase inhibition. Nat.Struct.Mol.Biol. (2021)

Release Date

2021-09-01

Peptides

Serine-protein kinase ATM: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine-protein kinase ATM

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