SMTL ID : 7ni5.1

Human ATM kinase with bound inhibitor KU-55933

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x UF8: 2-morpholin-4-yl-6-thianthren-1-yl-pyran-4-one(Non-covalent)

UF8.1: 14 residues within 4Å: Chain A: A.2723, P.2729, L.2745, K.2747, Y.2785, L.2797, E.2798, W.2799, C.2800, T.2803, P.2805, L.2907, I.2918, D.2919 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.2729, A:L.2745, A:L.2797, A:W.2799, A:I.2918 Hydrogen bonds: A:K.2747, A:C.2800, A:D.2919 UF8.4: 13 residues within 4Å: Chain B: A.2723, P.2729, L.2745, K.2747, Y.2785, L.2797, E.2798, W.2799, C.2800, T.2803, P.2805, L.2907, I.2918 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:P.2729, B:L.2745, B:L.2797, B:W.2799, B:W.2799, B:P.2805, B:L.2907, B:I.2918, B:I.2918 Hydrogen bonds: B:K.2747, B:C.2800, B:D.2919

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.1906, H.1925, C.1929, C.1930 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.1906, A:H.1925, A:H.1925, A:C.1929, A:C.1930 ZN.3: 6 residues within 4Å: Chain A: C.663, H.665, H.666, C.820, T.821, K.822 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.663, A:H.666, A:C.820 ZN.5: 4 residues within 4Å: Chain B: H.1906, H.1925, C.1929, C.1930 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.1906, B:H.1925, B:C.1929, B:C.1930 ZN.6: 5 residues within 4Å: Chain B: C.663, H.665, H.666, C.820, T.821 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.663, B:H.666, B:C.820

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stakyte, K. et al., Molecular basis of human ATM kinase inhibition. Nat.Struct.Mol.Biol. (2021)

Release Date

2021-09-01

Peptides

Serine-protein kinase ATM: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine-protein kinase ATM

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