SMTL ID : 7ni6.1

Human ATM kinase with bound ATPyS

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.1906, H.1925, C.1929, C.1930 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.1906, A:H.1925, A:C.1929, A:C.1930 ZN.4: 4 residues within 4Å: Chain B: H.1906, H.1925, C.1929, C.1930 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.1906, B:H.1925, B:C.1929, B:C.1930

2 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.2: 15 residues within 4Å: Chain A: A.2723, G.2724, G.2725, L.2745, K.2747, Y.2785, L.2797, E.2798, W.2799, C.2800, P.2805, L.2907, I.2918, D.2919 Ligands: MG.3 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:A.2723, A:E.2798, A:C.2800, A:Q.2904, A:D.2919 Salt bridges: A:K.2747, A:K.2747 pi-Stacking: A:W.2799 AGS.5: 15 residues within 4Å: Chain B: G.2725, V.2726, L.2745, K.2747, Y.2785, L.2797, E.2798, W.2799, C.2800, P.2805, L.2907, I.2918, D.2919, Y.2999 Ligands: MG.6 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:V.2726, B:E.2798, B:C.2800 Salt bridges: B:K.2747, B:K.2747 pi-Stacking: B:W.2799

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: N.2905, D.2919 Ligands: AGS.2 No protein-ligand interaction detected (PLIP) MG.6: 3 residues within 4Å: Chain B: N.2905, D.2919 Ligands: AGS.5 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.2919

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stakyte, K. et al., Molecular basis of human ATM kinase inhibition. Nat.Struct.Mol.Biol. (2021)

Release Date

2021-09-01

Peptides

Serine-protein kinase ATM: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine-protein kinase ATM

Related Entries With Identical Sequence