SMTL ID : 7nks.1 (1 other biounit)

Structure of the Hantaan virus Gn glycoprotein ectodomain in complex with Fab HTN-Gn1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN.1: 10 residues within 4Å: Chain A: P.33, N.119, T.121, F.122, G.303, P.305 Chain B: Y.54, T.58, Y.59, D.60 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.58, B:Y.59

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: S.278, I.279, V.280 Chain B: S.32 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.32, A:S.278 GOL.4: 5 residues within 4Å: Chain B: V.129, F.130, V.212, K.214 Ligands: GOL.5 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.129 GOL.5: 4 residues within 4Å: Chain B: A.126, S.128, T.210 Ligands: GOL.4 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: F.259, K.260, N.332, T.334 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.332

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rissanen, I. et al., Structural Basis for a Neutralizing Antibody Response Elicited by a Recombinant Hantaan Virus Gn Immunogen. Mbio (2021)

Release Date

2021-06-23

Peptides

Envelope polyprotein: A
Fab HTN-Gn1 heavy chain: B
Fab HTN-Gn1 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
D

Envelope polyprotein

Fab HTN-Gn1 heavy chain

Fab HTN-Gn1 light chain

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