SMTL ID : 7nld.1 (2 other biounits)

Structure of human Programmed cell death 1 ligand 1 (PD-L1) with low molecular mass inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

1 x UGZ: N-(2-((2'-chloro-3'-(2,3-dihydrobenzo[b][1,4]dioxin-6-yl)-3-methoxy-[1,1'-biphenyl]-4-yl)(methyl)amino)ethyl)methanesulfonamide(Non-covalent)

UGZ.1: 20 residues within 4Å: Chain A: A.1, F.2, T.3, I.37, Y.39, M.98, I.99, A.104, D.105, Y.106 Chain B: I.37, Y.39, Q.49, V.51, M.98, I.99, S.100, A.104, D.105, Y.106 10 PLIP interactions: 5 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:Y.39, B:M.98, B:A.104, A:M.98, A:A.104, A:Y.106 Hydrogen bonds: B:Q.49, A:D.105 pi-Stacking: B:Y.39 Halogen bonds: A:D.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muszak, D. et al., Terphenyl-Based Small-Molecule Inhibitors of Programmed Cell Death-1/Programmed Death-Ligand 1 Protein-Protein Interaction. J.Med.Chem. (2021)

Release Date

2021-08-11

Peptides

Programmed cell death 1 ligand 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Programmed cell death 1 ligand 1

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